Clone Name | rbastl29d12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PANX1_RAT (P60570) Pannexin-1 | 30 | 1.1 | 2 | PANX1_PONPY (Q5REE3) Pannexin-1 | 30 | 1.1 | 3 | PANX1_MOUSE (Q9JIP4) Pannexin-1 | 30 | 1.1 | 4 | PANX1_HUMAN (Q96RD7) Pannexin-1 | 30 | 1.1 | 5 | SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor | 29 | 3.2 | 6 | SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor | 28 | 5.4 | 7 | FA43B_HUMAN (Q6ZT52) Protein FAM43B | 28 | 7.1 | 8 | PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamm... | 27 | 9.2 |
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>PANX1_RAT (P60570) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_PONPY (Q5REE3) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_MOUSE (Q9JIP4) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_HUMAN (Q96RD7) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor| Length = 2213 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 50 YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 226 YK+Y ++ S+ +++ LPE V K+ TS+ ++F+ AG GP +Q Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795 Query: 227 YFHLLAVGFINFLAFN 274 H A G +FLAF+ Sbjct: 1796 RTHQAAPGAPSFLAFS 1811
>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor| Length = 2193 Score = 28.1 bits (61), Expect = 5.4 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 50 YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 226 YKVY ++ SR +++ LPE V+ K TS+ ++F+ AG GP Q Sbjct: 1719 YKVYYWEADSRNETEKMKV-LFLPEPVVKIKDLTSHTKYLISISAFNAAGDGPKSDPCQG 1777 Query: 227 YFHLLAVGFINFLAFN 274 H A G +FLAF+ Sbjct: 1778 RTHQAAPGPPSFLAFS 1793
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 74 TSRLQSKLRSCPTTLPEF*VER 139 TS L S LRSCP LP++ +ER Sbjct: 30 TSLLSSFLRSCPDLLPDWPLER 51
>PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamma-C3)| (Protocadherin 43) (PC-43) (Protocadherin 2) Length = 934 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 6/29 (20%) Frame = +2 Query: 188 PAGSGPNDKKKQLYFHLL------AVGFI 256 P+GS P ++KK L F+LL +VGF+ Sbjct: 678 PSGSAPREQKKNLTFYLLLSLILVSVGFV 706 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,515,510 Number of Sequences: 219361 Number of extensions: 778333 Number of successful extensions: 1874 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1874 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)