ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_RAT (P60570) Pannexin-1 30 1.1
2PANX1_PONPY (Q5REE3) Pannexin-1 30 1.1
3PANX1_MOUSE (Q9JIP4) Pannexin-1 30 1.1
4PANX1_HUMAN (Q96RD7) Pannexin-1 30 1.1
5SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor 29 3.2
6SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor 28 5.4
7FA43B_HUMAN (Q6ZT52) Protein FAM43B 28 7.1
8PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamm... 27 9.2

>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 226
            YK+Y  ++ S+ +++       LPE  V  K+ TS+       ++F+ AG GP    +Q 
Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795

Query: 227  YFHLLAVGFINFLAFN 274
              H  A G  +FLAF+
Sbjct: 1796 RTHQAAPGAPSFLAFS 1811



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>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor|
          Length = 2193

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 226
            YKVY  ++ SR +++       LPE  V+ K  TS+       ++F+ AG GP     Q 
Sbjct: 1719 YKVYYWEADSRNETEKMKV-LFLPEPVVKIKDLTSHTKYLISISAFNAAGDGPKSDPCQG 1777

Query: 227  YFHLLAVGFINFLAFN 274
              H  A G  +FLAF+
Sbjct: 1778 RTHQAAPGPPSFLAFS 1793



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>FA43B_HUMAN (Q6ZT52) Protein FAM43B|
          Length = 329

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 74  TSRLQSKLRSCPTTLPEF*VER 139
           TS L S LRSCP  LP++ +ER
Sbjct: 30  TSLLSSFLRSCPDLLPDWPLER 51



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>PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamma-C3)|
           (Protocadherin 43) (PC-43) (Protocadherin 2)
          Length = 934

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
 Frame = +2

Query: 188 PAGSGPNDKKKQLYFHLL------AVGFI 256
           P+GS P ++KK L F+LL      +VGF+
Sbjct: 678 PSGSAPREQKKNLTFYLLLSLILVSVGFV 706


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,515,510
Number of Sequences: 219361
Number of extensions: 778333
Number of successful extensions: 1874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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