>YLK2_CAEEL (P41950) Hypothetical protein D1044.2 precursor|
          Length = 1090

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 131  RVHTQAFSLF*PAEAEPSSFL-TSSSIPDA--SKESDVQVQQPA*TLHMEPSKPKRPN 295
            + HT   ++  P EA PS F+ T++  P A  + +  + VQQP+  ++ +P K +  N
Sbjct: 884  KAHTTTTTMMIPTEAPPSIFVFTTTQKPRAQSTTQKRIIVQQPSIVVNSQPPKQRNDN 941

>MATN2_HUMAN (O00339) Matrilin-2 precursor|
          Length = 956

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +3

Query: 120  CTRDACIHR-----PSVFFNLQKQNHLRSSPPAPSPMQAKNQTCRCSNL 251
            C+  A  HR      ++  + QK +H  S+ P+ SP++ K+  C+C NL
Sbjct: 875  CSNFAVQHRYLFEEDNLLRSTQKLSH--STKPSGSPLEEKHDQCKCENL 921

>RS7_PYRKO (Q5JE04) 30S ribosomal protein S7P|
          Length = 215

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 57  LQKHLTFRFELQKHVKFRNRWCTRDACIHRPSV 155
           + K LT RF + K VK   RW   D  +  PS+
Sbjct: 1   MAKPLTERFFIPKEVKVMGRWSVEDVTVEDPSL 33

>OPAA_NEIGO (Q04876) Opacity protein opA53 precursor (Fragment)|
          Length = 239

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +1

Query: 256 NSSHGTIQTQATKHNESDHYTHAQT*LGRYLLILIAETSIIHDTFSLPVSQRPPTNCNXS 435
           NSSH  I+TQ T+H E+  + HA + LG          S I+D F L    +P      +
Sbjct: 98  NSSHLNIKTQKTEHQENGTF-HATSSLG---------LSAIYD-FKLNDKFKPYIGVRVA 146

Query: 436 YGYGK 450
           YG+ K
Sbjct: 147 YGHVK 151

>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid|
           protein-binding protein) (PLPB1)
          Length = 1121

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 51  IELQKHLTFRFELQKHVKFRNRWCTRDACIHRPSVFFNLQKQNHLRSSPPAPSPMQAKNQ 230
           IE+ ++ T    + KH K  N + +  +C   P V      Q H  +S  APS      Q
Sbjct: 661 IEVDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDASQRHSSTS--APSSSMTSPQ 718

Query: 231 TCRCSNLHELFTWNHP 278
           + + S   E   W+ P
Sbjct: 719 SSQASRQDE---WDRP 731

>GPMI2_METAC (Q8TIY2) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase 2 (EC 5.4.2.1) (Phosphoglyceromutase 2)
           (BPG-independent PGAM 2) (iPGM 2)
          Length = 521

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +1

Query: 82  LNCKNMLNLGTDGVQETRAYTGLQSFLTCRSRTIFVPHLQLHPRCKQRIRRAGAATCMNS 261
           LN  NM  +G  G+ E  A   +++  TC  R I            + +++AG    + +
Sbjct: 404 LNFANMDMVGHTGIFEA-AVQAVEAVDTCVGRII------------EALKKAGGVALITA 450

Query: 262 SHGTIQTQATKHNESDHYTH 321
            HG  +    +H    H  H
Sbjct: 451 DHGNAEQMENQHTGEPHTAH 470

>VGLI_HHV2H (P13291) Glycoprotein I|
          Length = 372

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +3

Query: 18  KITPTTYVPKCIELQKHLTFRFELQKHVKFRNRWCTRDACIHRPSVFFNLQKQNHLRSSP 197
           ++  T Y    IEL     F + L  H        T  AC  RP+V F L +  H   SP
Sbjct: 63  QVPHTNYYDGIIEL-----FHYPLGNHCPRVVHVVTLTACPRRPAVAFTLCRSTHHAHSP 117

Query: 198 PAPS 209
             P+
Sbjct: 118 AYPT 121

>VGLI_HHV23 (P06764) Glycoprotein I|
          Length = 372

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +3

Query: 18  KITPTTYVPKCIELQKHLTFRFELQKHVKFRNRWCTRDACIHRPSVFFNLQKQNHLRSSP 197
           ++  T Y    IEL     F + L  H        T  AC  RP+V F L +  H   SP
Sbjct: 63  QVPHTNYYDGIIEL-----FHYPLGNHCPRVVHVVTLTACPRRPAVAFTLCRSTHHAHSP 117

Query: 198 PAPS 209
             P+
Sbjct: 118 AYPT 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,115,120
Number of Sequences: 219361
Number of extensions: 1448579
Number of successful extensions: 3363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3361
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)