ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1VGNM_BPMV (P23009) Genome polyprotein M (RNA2 polyprotein) [Cont... 30 1.8
2DBP3_CANGA (Q6FS54) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-) 29 3.1
3FUTSC_DROME (Q9W596) Microtubule-associated protein futsch 29 3.1
4INCE_CHICK (P53352) Inner centromere protein 28 6.9
5GERXB_BACAN (Q9ZFB5) Spore germination protein XB 28 6.9 
>VGNM_BPMV (P23009) Genome polyprotein M (RNA2 polyprotein) [Contains:|
           Movement protein (MP); Large coat protein (LCP) (Coat
           protein VP37); Small coat protein (SCP) (Coat protein
           VP23)]
          Length = 1018

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   NKPLSQLEKQASWEENCLVVQTVYIGD 89
           N P+S L + A+W++ CL+V+ V  G+
Sbjct: 873 NSPISNLLRVAAWKKGCLMVKVVMSGN 899
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>DBP3_CANGA (Q6FS54) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)|
          Length = 540

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 390 DKKEAEVRRTMKRRPSEKDKQPAESSDAQPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
           DKKE + ++  K +  +KDK+  +   A+ V    + LS+ +    K  K   Y    EL
Sbjct: 44  DKKEKKEKKEKKEKNDKKDKKDKKDKKAEQV----DKLSETTEQPSKQVKIGAYVENEEL 99

Query: 210 SSCPKRIV 187
           S  P+ ++
Sbjct: 100 SKQPQSVI 107
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>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE+V  +    A K+ +E+R     E 
Sbjct: 3773 KDEAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDE----AEKSKEESRRESVAEK 3828

Query: 210  SSCPKR 193
            S  P +
Sbjct: 3829 SPLPSK 3834



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            K EAE  +   RR S  +K P  S +A +P + AE++  +   S  +T +E+
Sbjct: 2182 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEETRRES 2233



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 2145 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2200

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2201 SPLPSK 2206



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 2108 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2163

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2164 SPLPSK 2169



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 2071 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2126

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2127 SPLPSK 2132



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 2034 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2089

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2090 SPLPSK 2095



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 1997 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2052

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2053 SPLPSK 2058



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 1960 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESVAEK 2015

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2016 SPLPSK 2021



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE+V  +    A K+ +E+R     E 
Sbjct: 3699 KDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDE----AEKSKEESRRESVAEK 3754

Query: 210  SS 205
            SS
Sbjct: 3755 SS 3756



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            K EAE  +   RR S  +K P  S +A +P + AE+V  +   S  ++ +E+
Sbjct: 2256 KDEAEKSKEESRRESAAEKSPLPSKEASRPASVAESVKDEADKSKEESRRES 2307



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVEL 211
            K EAE  +   RR S  +K P  S +A +P + AE++  +    A K+ +E+R     E 
Sbjct: 2219 KDEAEKSKEETRRESVAEKSPLPSKEASRPASVAESIKDE----AEKSKEESRRESAAEK 2274

Query: 210  SSCPKR 193
            S  P +
Sbjct: 2275 SPLPSK 2280



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            K EAE  +   RR S  +K P  S +A +P + AE+V  +   S  ++ +E+
Sbjct: 3810 KDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEADKSKEESRRES 3861



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 381  EAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            EAE  +   RR S  +K P  S +A +P + AE+V  D   S  ++ +E+
Sbjct: 3627 EAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDDAEKSKEESRRES 3676



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            K EAE  +   RR S  +K P  S +A +P + AE+V  +   S  ++ +E+
Sbjct: 3477 KDEAEKSKEESRRDSVAEKSPLASKEASRPASVAESVQDEAEKSKEESRRES 3528



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 387  KKEAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 235
            K EAE  +   RR S  +K P  S +A +P + AE+V  +   S  ++ +E+
Sbjct: 3366 KDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESVKDEADKSKEESRRES 3417
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>INCE_CHICK (P53352) Inner centromere protein|
          Length = 877

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 348 PSEKDKQPAESS--DAQPVA*AENVLSDFSPSAGKTGK 241
           PS  DK P ESS  ++QP+  A  ++   +P A   GK
Sbjct: 188 PSSDDKSPKESSAAESQPLPAASELIVPHTPEAKGAGK 225
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>GERXB_BACAN (Q9ZFB5) Spore germination protein XB|
          Length = 355

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 201 GKNSIQHITGIVLP-----SLFCQLKD*SQRERSLLKPLAEH 311
           G  SI   TGI+LP       F  + +   ++ SLLKP+ EH
Sbjct: 131 GVQSIALTTGILLPVVFLLGFFVMIANFPHKDYSLLKPIMEH 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,723,298
Number of Sequences: 219361
Number of extensions: 847727
Number of successful extensions: 2323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2319
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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