ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
2dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
5gb|AC163677.2| Mus musculus BAC clone RP24-86D16 from chromosome... 46 0.086
6dbj|AK144403.1| Mus musculus 11 days embryo spinal cord cDNA, RI... 46 0.086
7dbj|AK154868.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.086
8dbj|AK152362.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 46 0.086
9dbj|AK155551.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.086
10dbj|AK167343.1| Mus musculus 14 days embryo liver cDNA, RIKEN fu... 46 0.086
11dbj|AK090329.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu... 46 0.086
12dbj|AK218255.1| Mus musculus cDNA, clone:Y2G0144I19, strand:minu... 46 0.086
13dbj|AK214463.1| Mus musculus cDNA, clone:Y2G0131N14, strand:minu... 46 0.086
14dbj|AK212100.1| Mus musculus cDNA, clone:Y2G0123N18, strand:plus... 46 0.086
15dbj|AK212091.1| Mus musculus cDNA, clone:Y2G0123N09, strand:minu... 46 0.086
16dbj|AK211181.1| Mus musculus cDNA, clone:Y2G0120O15, strand:plus... 46 0.086
17dbj|AK207704.1| Mus musculus cDNA, clone:Y2G0108N15, strand:minu... 46 0.086
18dbj|AK207266.1| Mus musculus cDNA, clone:Y2G0107H11, strand:plus... 46 0.086
19dbj|AK183228.1| Mus musculus cDNA, clone:Y0G0125C16, strand:plus... 46 0.086
20gb|BC025875.1| Mus musculus solute carrier family 35, member B2,... 46 0.086
21gb|BC036992.1| Mus musculus solute carrier family 35, member B2,... 46 0.086
22emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86... 44 0.34
23gb|AF134591.2|AF134591 Cryptosporidium parvum P-type ATPase 2 (A... 44 0.34
24gb|AC169702.1| Rhesus Macaque BAC CH250-107F18 (Children's Hosp... 42 1.3
25emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on ch... 42 1.3
26gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, com... 40 5.3
27gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, com... 40 5.3
28gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete... 40 5.3
29gb|AY458633.1| Uncultured bacterium 313 clone EBAC750-11E01 geno... 40 5.3
30gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, com... 40 5.3
31gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Ho... 40 5.3
32emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chrom... 40 5.3
33gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, com... 40 5.3
34emb|CR861258.1| Pongo pygmaeus mRNA; cDNA DKFZp459H223 (from clo... 40 5.3
35emb|CR860338.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1245 (from cl... 40 5.3
36emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 ... 40 5.3
37gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complet... 40 5.3
38gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complet... 40 5.3
39gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, c... 40 5.3
40gb|AC140242.5| Mus musculus BAC clone RP23-290N4 from chromosome... 40 5.3
41gb|AC174643.3| Mus musculus BAC clone RP24-235D23 from chromosom... 40 5.3
42emb|AJ937867.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
43emb|AJ937866.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
44emb|AJ872124.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
45emb|AJ872123.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
46emb|AJ872122.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
47emb|AJ872121.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
48emb|AJ872120.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
49emb|AJ872119.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
50emb|AJ872118.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
51emb|AJ872117.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3
52emb|AJ872116.1| Tripterygion delaisi xanthosoma mitochondrial pa... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 332      ttatctttctcactcggtctccgcttcatcgttctcctgacttctgcctccttcttgtca 391
                |||||||||||||| |||||||||||||||| | ||||||||||| | ||||| || |||
Sbjct: 27966818 ttatctttctcacttggtctccgcttcatcgatttcctgacttcttcttcctttttatca 27966759

                      
Query: 392      acaaac 397
                ||||||
Sbjct: 27966758 acaaac 27966753
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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0547F09
          Length = 140615

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 332   ttatctttctcactcggtctccgcttcatcgttctcctgacttctgcctccttcttgtca 391
             |||||||||||||| |||||||||||||||| | ||||||||||| | ||||| || |||
Sbjct: 11637 ttatctttctcacttggtctccgcttcatcgatttcctgacttcttcttcctttttatca 11578

                   
Query: 392   acaaac 397
             ||||||
Sbjct: 11577 acaaac 11572
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>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0003H08
          Length = 142068

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                          
Query: 332    ttatctttctcactcggtctccgcttcatcgttctcctgacttctgcctccttcttgtca 391
              |||||||||||||| |||||||||||||||| | ||||||||||| | ||||| || |||
Sbjct: 120741 ttatctttctcacttggtctccgcttcatcgatttcctgacttcttcttcctttttatca 120682

                    
Query: 392    acaaac 397
              ||||||
Sbjct: 120681 acaaac 120676
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>dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J21, full
            insert sequence
          Length = 3189

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttatctttctcactcggtctccgcttcatcgttctcctgacttctgcctccttcttgtca 391
            ||||| |||||||| |||||||||||||||| | ||||||||||| | ||||| || |||
Sbjct: 2900 ttatccttctcacttggtctccgcttcatcgatttcctgacttcttcttcctttttatca 2841

                  
Query: 392  acaaac 397
            ||||||
Sbjct: 2840 acaaac 2835
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>gb|AC163677.2| Mus musculus BAC clone RP24-86D16 from chromosome 17, complete sequence
          Length = 222584

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 40    ccagctgggaagagaattgttta 62
             |||||||||||||||||||||||
Sbjct: 37011 ccagctgggaagagaattgttta 36989
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>dbj|AK144403.1| Mus musculus 11 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:G630055L22 product:solute carrier
            family 35, member B1, full insert sequence
          Length = 1834

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1653 ccagctgggaagagaattgttta 1675
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>dbj|AK154868.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630110B06
            product:solute carrier family 35, member B1, full insert
            sequence
          Length = 1797

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1616 ccagctgggaagagaattgttta 1638
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>dbj|AK152362.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830067A10 product:solute carrier family
            35, member B1, full insert sequence
          Length = 1813

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1631 ccagctgggaagagaattgttta 1653
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>dbj|AK155551.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630322E07
            product:solute carrier family 35, member B1, full insert
            sequence
          Length = 1845

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1663 ccagctgggaagagaattgttta 1685
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>dbj|AK167343.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
            library, clone:I530005M14 product:solute carrier family
            35, member B1, full insert sequence
          Length = 2139

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1958 ccagctgggaagagaattgttta 1980
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>dbj|AK090329.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched
            library, clone:G630052M14 product:EMBRYONIC SEVEN-SPAN
            TRANSMEMBRANE PROTEIN-LIKE PROTEIN homolog [Mus
            musculus], full insert sequence
          Length = 2329

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 2148 ccagctgggaagagaattgttta 2170
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>dbj|AK218255.1| Mus musculus cDNA, clone:Y2G0144I19, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 400

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 208 ccagctgggaagagaattgttta 230
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>dbj|AK214463.1| Mus musculus cDNA, clone:Y2G0131N14, strand:minus,
          reference:ENSEMBL:Mouse-Transcript-
          ENST:ENSMUST00000051684, based on BLAT search
          Length = 389

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 ccagctgggaagagaattgttta 62
          |||||||||||||||||||||||
Sbjct: 40 ccagctgggaagagaattgttta 62
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>dbj|AK212100.1| Mus musculus cDNA, clone:Y2G0123N18, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 411

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 292 ccagctgggaagagaattgttta 314
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>dbj|AK212091.1| Mus musculus cDNA, clone:Y2G0123N09, strand:minus,
          reference:ENSEMBL:Mouse-Transcript-
          ENST:ENSMUST00000051684, based on BLAT search
          Length = 408

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 ccagctgggaagagaattgttta 62
          |||||||||||||||||||||||
Sbjct: 59 ccagctgggaagagaattgttta 81
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>dbj|AK211181.1| Mus musculus cDNA, clone:Y2G0120O15, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 379

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 292 ccagctgggaagagaattgttta 314
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>dbj|AK207704.1| Mus musculus cDNA, clone:Y2G0108N15, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 380

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 188 ccagctgggaagagaattgttta 210
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>dbj|AK207266.1| Mus musculus cDNA, clone:Y2G0107H11, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 399

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 291 ccagctgggaagagaattgttta 313
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>dbj|AK183228.1| Mus musculus cDNA, clone:Y0G0125C16, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 420

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ccagctgggaagagaattgttta 62
           |||||||||||||||||||||||
Sbjct: 294 ccagctgggaagagaattgttta 316
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>gb|BC025875.1| Mus musculus solute carrier family 35, member B2, mRNA (cDNA clone
            MGC:31031 IMAGE:5137689), complete cds
          Length = 1850

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1629 ccagctgggaagagaattgttta 1651
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>gb|BC036992.1| Mus musculus solute carrier family 35, member B2, mRNA (cDNA clone
            MGC:46984 IMAGE:5003855), complete cds
          Length = 1884

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 40   ccagctgggaagagaattgttta 62
            |||||||||||||||||||||||
Sbjct: 1637 ccagctgggaagagaattgttta 1659
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>emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86L3, complete sequence
          Length = 154099

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 131    catgctacaacaacaagttaga 152
              ||||||||||||||||||||||
Sbjct: 128788 catgctacaacaacaagttaga 128809
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>gb|AF134591.2|AF134591 Cryptosporidium parvum P-type ATPase 2 (ATPase2) gene, complete cds
          Length = 3863

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 102 acttgatgaaagaaaaaagatt 123
           ||||||||||||||||||||||
Sbjct: 201 acttgatgaaagaaaaaagatt 222
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>gb|AC169702.1| Rhesus Macaque  BAC CH250-107F18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 157010

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   attcaacatattaccggtatc 233
             |||||||||||||||||||||
Sbjct: 31149 attcaacatattaccggtatc 31169
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>emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on chromosome 13 Contains the
             gene for the ortholog of rat and human
             ubiquinol-cytochrome c reductase, Rieske iron-sulfur
             polypeptide 1 UQCRFS1, a novel gene and a CpG island,
             complete sequence
          Length = 194065

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 258   ctgaaggactgaagtcagaga 278
             |||||||||||||||||||||
Sbjct: 54116 ctgaaggactgaagtcagaga 54136
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>gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, complete sequence
          Length = 187614

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   tcctgacttctgcctccttc 385
             ||||||||||||||||||||
Sbjct: 42601 tcctgacttctgcctccttc 42620
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>gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, complete sequence
          Length = 197114

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   tcctgacttctgcctccttc 385
             ||||||||||||||||||||
Sbjct: 62235 tcctgacttctgcctccttc 62216
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>gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete sequence
          Length = 111942

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    aatgacttgatgaaagaaaa 117
             ||||||||||||||||||||
Sbjct: 12625 aatgacttgatgaaagaaaa 12606
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>gb|AY458633.1| Uncultured bacterium 313 clone EBAC750-11E01 genomic sequence
          Length = 27088

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tacaacaacaagttagatca 155
             ||||||||||||||||||||
Sbjct: 23256 tacaacaacaagttagatca 23237
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>gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, complete sequence
          Length = 169511

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aatgacttgatgaaagaaaa 117
             ||||||||||||||||||||
Sbjct: 33255 aatgacttgatgaaagaaaa 33274
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>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 293757

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gactgaagtcagagagaacg 283
             ||||||||||||||||||||
Sbjct: 79551 gactgaagtcagagagaacg 79532
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>emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chromosome 1q32.1-32.3
             Contains the 5' end of the LRRN5 gene for leucine rich
             repeat neuronal 5 and a novel gene, complete sequence
          Length = 162345

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   ctgacttctgcctccttctt 387
             ||||||||||||||||||||
Sbjct: 30469 ctgacttctgcctccttctt 30488
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>gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gaaggactgaagtcagagag 279
             ||||||||||||||||||||
Sbjct: 12785 gaaggactgaagtcagagag 12804
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>emb|CR861258.1| Pongo pygmaeus mRNA; cDNA DKFZp459H223 (from clone DKFZp459H223)
          Length = 3619

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  gaaggactgaagtcagagag 279
            ||||||||||||||||||||
Sbjct: 2049 gaaggactgaagtcagagag 2068
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>emb|CR860338.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1245 (from clone DKFZp459K1245)
          Length = 2025

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 gaaggactgaagtcagagag 279
           ||||||||||||||||||||
Sbjct: 454 gaaggactgaagtcagagag 473
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>emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 in linkage group 5,
             complete sequence
          Length = 160405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ctgaaggactgaagtcagag 277
             ||||||||||||||||||||
Sbjct: 72643 ctgaaggactgaagtcagag 72624
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>gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complete sequence
          Length = 124882

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   tgacttctgcctccttcttg 388
             ||||||||||||||||||||
Sbjct: 31226 tgacttctgcctccttcttg 31207
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>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence
          Length = 240957

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  tgacttctgcctccttcttg 388
            ||||||||||||||||||||
Sbjct: 5116 tgacttctgcctccttcttg 5097
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>gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gaaggactgaagtcagagag 279
              ||||||||||||||||||||
Sbjct: 171010 gaaggactgaagtcagagag 171029
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>gb|AC140242.5| Mus musculus BAC clone RP23-290N4 from chromosome 8, complete sequence
          Length = 168835

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acaagccagctgggaagaga 54
             ||||||||||||||||||||
Sbjct: 65637 acaagccagctgggaagaga 65656
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>gb|AC174643.3| Mus musculus BAC clone RP24-235D23 from chromosome 8, complete sequence
          Length = 197695

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acaagccagctgggaagaga 54
             ||||||||||||||||||||
Sbjct: 81897 acaagccagctgggaagaga 81916
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>emb|AJ937867.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase I, from Greece Ciclades Islands
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ937866.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase I, from Spain Ceuta
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872124.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Vigo
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872123.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Tarifa
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872122.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Corsica
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872121.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Cabo Gata
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872120.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Cabo Palos
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872119.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Tarragona
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872118.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Blanes
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872117.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Formentera
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174
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>emb|AJ872116.1| Tripterygion delaisi xanthosoma mitochondrial partial COI gene for
           cytochrome oxidase subunit I, isolate Columbretes
          Length = 541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ctgacttctgcctccttctt 387
           ||||||||||||||||||||
Sbjct: 155 ctgacttctgcctccttctt 174


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,735,767
Number of Sequences: 3902068
Number of extensions: 4735767
Number of successful extensions: 90378
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90286
Number of HSP's gapped (non-prelim): 92
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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