>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 29/39 (74%), Positives = 34/39 (87%)
 Frame = -1

Query: 466 GEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLGDKI 350
           GEDAL NI IEKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 355 GEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEKI 393

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 4/48 (8%)
 Frame = -1

Query: 466  GEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 335
            GEDAL N+SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 902  GEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 4/48 (8%)
 Frame = -1

Query: 466  GEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 335
            GEDAL N+SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 902  GEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/47 (63%), Positives = 39/47 (82%), Gaps = 3/47 (6%)
 Frame = -1

Query: 466  GEDALVNISIEKQVD---GKLSGYIRIRSKTQGIALSLGDKITLKQK 335
            GE+AL N+SIEK VD    K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 912  GENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQK 958

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = -1

Query: 466  GEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLG 359
            GEDAL+++S+EK V G +SG++RIRSKTQGIALSLG
Sbjct: 902  GEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 4/48 (8%)
 Frame = -1

Query: 466  GEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 335
            GEDAL N+S EK +    D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 902  GEDALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
 Frame = -1

Query: 466  GEDALVNISIEKQVDGKLS---GYIRIRSKTQGIALSLGDKITLKQK 335
            GEDAL N+ IEK  D K +   GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 919  GEDALANLCIEK--DSKTNDVIGYVRIRSKGQGLALSLGDRVALIAK 963

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 1   RH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 144
           R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 568 RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,889,887
Number of Sequences: 219361
Number of extensions: 1103486
Number of successful extensions: 2844
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2839
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)