Clone Name | rbastl29d02 |
---|---|
Clone Library Name | barley_pub |
>LYAM2_PIG (P98110) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 484 Score = 35.0 bits (79), Expect = 0.10 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1 Query: 37 LCLWLAATPTPTSVHAECLQTFNITPIQMVPG 132 LC A TPT S H EC++T N + Q PG Sbjct: 138 LCYTAACTPTSCSGHGECIETINSSTCQCYPG 169
>LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 485 Score = 32.0 bits (71), Expect = 0.88 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 37 LCLWLAATPTPTSVHAECLQTFNITPIQMVPG 132 LC A PTP H EC++T N Q PG Sbjct: 138 LCYKAACNPTPCGSHGECVETINNYTCQCHPG 169
>LYAM2_CANFA (P33730) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 611 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +1 Query: 37 LCLWLAATPTPTSVHAECLQTFNITPIQMVPG 132 LC A TPT S H EC++T N + PG Sbjct: 138 LCYTAACTPTSCSGHGECVETVNNYTCKCHPG 169
>LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 610 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 37 LCLWLAATPTPTSVHAECLQTFNITPIQMVPG 132 LC A T T S H EC++T N Q PG Sbjct: 136 LCYTAACTHTSCSGHGECVETINNYTCQCHPG 167
>SC6A3_RAT (P23977) Sodium-dependent dopamine transporter (DA transporter)| (DAT) Length = 619 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 235 LSWYQKNINWNTTNDADIHLGRYLSGIHSHD-FLPPRQLRYFTSSVLFKFIQQRLVDSVA 411 L W N WN+ N +D H G+ +D F YF VL + + D Sbjct: 175 LPWIHCNNTWNSPNCSDAHASNSSDGLGLNDTFGTTPAAEYFERGVLHLHQSRGIDDLGP 234 Query: 412 SHWRHPVC 435 W+ C Sbjct: 235 PRWQLTAC 242
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 334 PPRQLRYFTSSVLFKFIQQRLVDSVASHW 420 PPR+L + SS + K ++ L+ + AS W Sbjct: 357 PPRELSFTKSSQVVKAVRDTLISACASQW 385
>SC6A3_MOUSE (Q61327) Sodium-dependent dopamine transporter (DA transporter)| (DAT) Length = 619 Score = 28.5 bits (62), Expect = 9.7 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 235 LSWYQKNINWNTTNDADIHLGRYLSGIHSHD-FLPPRQLRYFTSSVLFKFIQQRLVDSVA 411 L W N WN+ N +D H G+ +D F YF VL + + D Sbjct: 175 LPWIHCNNTWNSPNCSDAHSSNSSDGLGLNDTFGTTPAAEYFERGVLHLHQSRGIDDLGP 234 Query: 412 SHWRHPVC 435 W+ C Sbjct: 235 PRWQLTAC 242
>7UP2_DROME (P16376) Steroid receptor seven-up, isoform A| Length = 746 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 34 YLCLWLAATPTPTSVHAECLQTFNITPIQMV 126 Y+ L L A P PTS + +C+Q NI I + Sbjct: 311 YISLLLRAEPYPTSRYGQCMQPNNIMGIDNI 341
>7UP1_DROME (P16375) Steroid receptor seven-up, isoforms B/C| Length = 543 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 34 YLCLWLAATPTPTSVHAECLQTFNITPIQMV 126 Y+ L L A P PTS + +C+Q NI I + Sbjct: 311 YISLLLRAEPYPTSRYGQCMQPNNIMGIDNI 341 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,287,388 Number of Sequences: 219361 Number of extensions: 1338364 Number of successful extensions: 3344 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3256 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3344 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)