ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
2gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 5e-22
3emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 113 5e-22
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
6emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 105 1e-19
7dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
8dbj|AK058259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
9gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence 46 0.11
10gb|BT016858.1| Zea mays clone Contig691 mRNA sequence 46 0.11
11emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in ... 46 0.11
12gb|AY103752.1| Zea mays PCO092520 mRNA sequence 46 0.11
13gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Par... 42 1.6
14gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complet... 42 1.6
15gb|DQ396371.1| HIV-1 isolate 03ZAPS155MB1 from South Africa, com... 40 6.5
16gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, com... 40 6.5
17emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 6.5
18emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in... 40 6.5
19emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in... 40 6.5
20gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, compl... 40 6.5
21gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 40 6.5
22gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, comple... 40 6.5
23gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, comple... 40 6.5 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 5e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                          
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
              ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 243006 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggacccatcgga 242947

                               
Query: 461    ggcatacccatcccgcc 477
              ||||| ||||| |||||
Sbjct: 242946 ggcatccccattccgcc 242930



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 211    ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 243157 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 243113



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 243309 aagtgtacatgcaaaatgtctacaagcttt 243280
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 5e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                          
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
              ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 243006 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggacccatcgga 242947

                               
Query: 461    ggcatacccatcccgcc 477
              ||||| ||||| |||||
Sbjct: 242946 ggcatccccattccgcc 242930



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 211    ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 243157 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 243113



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 243309 aagtgtacatgcaaaatgtctacaagcttt 243280
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score =  113 bits (57), Expect = 5e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                         
Query: 401   actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
             ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 61987 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggacccatcgga 62046

                              
Query: 461   ggcatacccatcccgcc 477
             ||||| ||||| |||||
Sbjct: 62047 ggcatccccattccgcc 62063



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 211   ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
             ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 61836 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 61880



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 72    aagtgtacatgcagaatgtctacaaacttt 101
             ||||||||||||| ||||||||||| ||||
Sbjct: 61684 aagtgtacatgcaaaatgtctacaagcttt 61713
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
              ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct: 258397 actcagtagcttcccattggaggcatcccatatgctggcataggtccaggacccatcgga 258338

                               
Query: 461    ggcatacccatcccgcc 477
              ||||| ||||| |||||
Sbjct: 258337 ggcatccccattccgcc 258321



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                          
Query: 154    ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
              |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 258602 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 258545

                                                         
Query: 213    ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 258544 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 258502



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 258700 aagtgtacatgcaaaatgtctacaagcttt 258671
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
              ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct: 258397 actcagtagcttcccattggaggcatcccatatgctggcataggtccaggacccatcgga 258338

                               
Query: 461    ggcatacccatcccgcc 477
              ||||| ||||| |||||
Sbjct: 258337 ggcatccccattccgcc 258321



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                          
Query: 154    ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
              |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 258602 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 258545

                                                         
Query: 213    ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 258544 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 258502



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 258700 aagtgtacatgcaaaatgtctacaagcttt 258671
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>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 96667

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                         
Query: 401   actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
             ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct: 16859 actcagtagcttcccattggaggcatcccatatgctggcataggtccaggacccatcgga 16918

                              
Query: 461   ggcatacccatcccgcc 477
             ||||| ||||| |||||
Sbjct: 16919 ggcatccccattccgcc 16935



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 154   ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
             |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 16654 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 16711

                                                        
Query: 213   ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
             ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 16712 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 16754



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 72    aagtgtacatgcagaatgtctacaaacttt 101
             ||||||||||||| ||||||||||| ||||
Sbjct: 16556 aagtgtacatgcaaaatgtctacaagcttt 16585
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>dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H07, full
           insert sequence
          Length = 847

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                       
Query: 401 actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggacccatcgga 460
           |||||||||||||||||||||||| |||| ||||||||||| || || ||||||||||||
Sbjct: 371 actcagtagcttcccattggaggcgtcccatatgctggcataggtccaggacccatcgga 312

                            
Query: 461 ggcatacccatcccgcc 477
           ||||| ||||| |||||
Sbjct: 311 ggcatccccattccgcc 295



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                       
Query: 154 ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
           |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 576 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 519

                                                      
Query: 213 ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
           ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 518 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 476



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 72  aagtgtacatgcagaatgtctacaaacttt 101
           ||||||||||||| ||||||||||| ||||
Sbjct: 674 aagtgtacatgcaaaatgtctacaagcttt 645
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>dbj|AK058259.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E12, full
           insert sequence
          Length = 321

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                       
Query: 154 ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
           |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 129 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 72

                                                      
Query: 213 ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
           ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 71  ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 29



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 72  aagtgtacatgcagaatgtctacaaacttt 101
           ||||||||||||| ||||||||||| ||||
Sbjct: 227 aagtgtacatgcaaaatgtctacaagcttt 198
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>gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence
          Length = 1090

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 403 tcagtagcttcccattggaggcatcccgtatgctggcat 441
           ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 821 tcagtagcttcccatcggtggcatcccaaatgctggcat 783
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>gb|BT016858.1| Zea mays clone Contig691 mRNA sequence
          Length = 1598

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 403  tcagtagcttcccattggaggcatcccgtatgctggcat 441
            ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 1339 tcagtagcttcccatcggtggcatcccaaatgctggcat 1301
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>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9,
             complete sequence
          Length = 217065

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 169   cgtaatatatataatatagcatc 191
             |||||||||||||||||||||||
Sbjct: 50545 cgtaatatatataatatagcatc 50523
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>gb|AY103752.1| Zea mays PCO092520 mRNA sequence
          Length = 1767

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 403  tcagtagcttcccattggaggcatcccgtatgctggcat 441
            ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 1433 tcagtagcttcccatcggtggcatcccaaatgctggcat 1395
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>gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 147146

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 318    ttctcatgatttcctccctcc 338
              |||||||||||||||||||||
Sbjct: 104363 ttctcatgatttcctccctcc 104343
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>gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complete sequence
          Length = 101158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   gtaatatatataatatagcat 190
             |||||||||||||||||||||
Sbjct: 92775 gtaatatatataatatagcat 92795
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>gb|DQ396371.1| HIV-1 isolate 03ZAPS155MB1 from South Africa, complete genome
          Length = 9008

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  aacacaaccaatgacgcaga 284
            ||||||||||||||||||||
Sbjct: 6810 aacacaaccaatgacgcaga 6829
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>gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, complete sequence
          Length = 161625

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    taatatatataatatagcat 190
              ||||||||||||||||||||
Sbjct: 118061 taatatatataatatagcat 118042
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>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tgagatatttcacatcatct 366
              ||||||||||||||||||||
Sbjct: 163435 tgagatatttcacatcatct 163454
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>emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in linkage group 15,
              complete sequence
          Length = 135398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    aaagaatattaactggaaca 268
              ||||||||||||||||||||
Sbjct: 101522 aaagaatattaactggaaca 101503
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>emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in linkage group 3,
             complete sequence
          Length = 124731

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   tctctgggatacattctcat 324
             ||||||||||||||||||||
Sbjct: 11920 tctctgggatacattctcat 11901
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>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence
          Length = 131913

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  caatataacacctatacaaa 121
            ||||||||||||||||||||
Sbjct: 1186 caatataacacctatacaaa 1167
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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     gaatgtctacaaactttcaa 104
              ||||||||||||||||||||
Sbjct: 100323 gaatgtctacaaactttcaa 100304
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>gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    tcctggtaccaaaagaatat 257
              ||||||||||||||||||||
Sbjct: 117476 tcctggtaccaaaagaatat 117457
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>gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, complete sequence
          Length = 158548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tcctggtaccaaaagaatat 257
             ||||||||||||||||||||
Sbjct: 93315 tcctggtaccaaaagaatat 93296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,729,909
Number of Sequences: 3902068
Number of extensions: 4729909
Number of successful extensions: 127923
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127720
Number of HSP's gapped (non-prelim): 203
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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