ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940 34 0.12
2U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490 33 0.26
3MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormalit... 31 0.99

>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 405  KALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGGRSEKKKNR 250
            +ALQ+ K+S+SG+ISVKS+K+  +             K   S  +S+  K R
Sbjct: 968  EALQHSKISSSGIISVKSTKSENENGFDKSTKKRSSDKRSSSSSKSKSSKKR 1019



to top

>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490|
          Length = 1058

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 405  KALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGGRSEKKKNR 250
            +ALQ  K+S+SG+IS++S+KT                +G D    +  KK R
Sbjct: 1006 EALQKSKISSSGLISIESTKTDNKKEKPSGFDKSAKKRGNDKHSSTSNKKRR 1057



to top

>MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormality protein 10)|
          Length = 724

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 267 EKKKNRT*SCHLELRWSDPGILKSPEKPLQSLSSRRGKREAEVAKQAIICRISLTNLSKT 88
           +++ N    CH + +W++       E  L S  +++G + +E+ K+  IC       SK 
Sbjct: 276 DRQTNDAWPCHRKEQWTNTTCQTCDEHYLCSKKAKKGTKRSELKKEPCICE------SKG 329

Query: 87  LW---HHHASILL 58
           L+   H HA+++L
Sbjct: 330 LFCIKHEHAAMVL 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,219,827
Number of Sequences: 219361
Number of extensions: 960668
Number of successful extensions: 3362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3362
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top