Clone Name | rbastl29c12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940 | 34 | 0.12 | 2 | U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490 | 33 | 0.26 | 3 | MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormalit... | 31 | 0.99 |
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>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940| Length = 1024 Score = 34.3 bits (77), Expect = 0.12 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -3 Query: 405 KALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGGRSEKKKNR 250 +ALQ+ K+S+SG+ISVKS+K+ + K S +S+ K R Sbjct: 968 EALQHSKISSSGIISVKSTKSENENGFDKSTKKRSSDKRSSSSSKSKSSKKR 1019
>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490| Length = 1058 Score = 33.1 bits (74), Expect = 0.26 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = -3 Query: 405 KALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGGRSEKKKNR 250 +ALQ K+S+SG+IS++S+KT +G D + KK R Sbjct: 1006 EALQKSKISSSGLISIESTKTDNKKEKPSGFDKSAKKRGNDKHSSTSNKKRR 1057
>MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormality protein 10)| Length = 724 Score = 31.2 bits (69), Expect = 0.99 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -3 Query: 267 EKKKNRT*SCHLELRWSDPGILKSPEKPLQSLSSRRGKREAEVAKQAIICRISLTNLSKT 88 +++ N CH + +W++ E L S +++G + +E+ K+ IC SK Sbjct: 276 DRQTNDAWPCHRKEQWTNTTCQTCDEHYLCSKKAKKGTKRSELKKEPCICE------SKG 329 Query: 87 LW---HHHASILL 58 L+ H HA+++L Sbjct: 330 LFCIKHEHAAMVL 342 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,219,827 Number of Sequences: 219361 Number of extensions: 960668 Number of successful extensions: 3362 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3326 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3362 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)