>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full
            insert sequence
          Length = 2846

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 398  tagtactcccatatacggatgaacttctcatcaaagcccagggccaaaattttatct 454
            |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatct 2513

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                     
Query: 398     tagtactcccatatacggatgaacttctcatcaaagcccagggccaaaatttta 451
               |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttta 9539402

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                     
Query: 398     tagtactcccatatacggatgaacttctcatcaaagcccagggccaaaatttta 451
               |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttta 9539287

>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 165137

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 398  tagtactcccatatacggatgaacttctcatcaaagcccagggccaaaatttta 451
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttta 2713

>ref|XM_478073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 398  tagtactcccatatacggatgaacttctcatcaaagcccaggg 440
            |||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 2267 tagtactcccatatgcggatgaacttgtcatcgaatcccaggg 2225

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 398      tagtactcccatatacggatgaacttctcatcaaagcccaggg 440
                |||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 17066512 tagtactcccatatgcggatgaacttgtcatcgaatcccaggg 17066470

>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0016H06
          Length = 148158

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 398    tagtactcccatatacggatgaacttctcatcaaagcccaggg 440
              |||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 145923 tagtactcccatatgcggatgaacttgtcatcgaatcccaggg 145881

>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 398   tagtactcccatatacggatgaacttctcatcaaagcccaggg 440
             |||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 19638 tagtactcccatatgcggatgaacttgtcatcgaatcccaggg 19596

>dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full
            insert sequence
          Length = 1367

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 398  tagtactcccatatacggatgaacttctcatcaaagcccaggg 440
            |||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 1044 tagtactcccatatgcggatgaacttgtcatcgaatcccaggg 1002

>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 164   gggacgaaagcctttttcgata 185
             ||||||||||||||||||||||
Sbjct: 19059 gggacgaaagcctttttcgata 19038

>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the
             5' end of the PPP3CB gene for protein phosphatase 3
             (formerly 2B) catalytic subunit beta isoform (calcineurin
             A beta), two novel genes (FLJ37318), the 3' end of a novel
             gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG
             island, complete sequence
          Length = 152161

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 338   aaaacaacctggtaatctccaa 359
             ||||||||||||||||||||||
Sbjct: 43260 aaaacaacctggtaatctccaa 43281

>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence
          Length = 190681

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 338    aaaacaacctggtaatctccaa 359
              ||||||||||||||||||||||
Sbjct: 177522 aaaacaacctggtaatctccaa 177501

>ref|NM_119225.2| Arabidopsis thaliana unknown protein AT4G30790 mRNA, complete cds
          Length = 3744

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  aagtaacagttcgacagctga 270
            |||||||||||||||||||||
Sbjct: 2346 aagtaacagttcgacagctga 2366

>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73
          Length = 194862

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    aagtaacagttcgacagctga 270
              |||||||||||||||||||||
Sbjct: 141071 aagtaacagttcgacagctga 141051

>gb|AC154038.1| Mus musculus 6 BAC RP23-49L8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213878

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     tttattaagaaagggaaagca 40
              |||||||||||||||||||||
Sbjct: 205367 tttattaagaaagggaaagca 205347

>gb|AC153860.4| Mus musculus 6 BAC RP23-170C11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213719

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     tttattaagaaagggaaagca 40
              |||||||||||||||||||||
Sbjct: 147382 tttattaagaaagggaaagca 147402

>emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21
          Length = 77860

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   aagtaacagttcgacagctga 270
             |||||||||||||||||||||
Sbjct: 39955 aagtaacagttcgacagctga 39935

>gb|BT014528.1| Lycopersicon esculentum clone 133942F, mRNA sequence
          Length = 1907

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 413 cggatgaacttctcatcaaa 432
           ||||||||||||||||||||
Sbjct: 617 cggatgaacttctcatcaaa 598

>gb|AC133211.3| Mus musculus BAC clone RP23-36M18 from chromosome 12, complete sequence
          Length = 238126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    agcagataaaaagtgacaaa 56
             ||||||||||||||||||||
Sbjct: 87420 agcagataaaaagtgacaaa 87439

>emb|AL109660.14|HSJ666F24 Human DNA sequence from clone RP4-666F24 on chromosome 1p13.1-13.3
             Contains the TSHB gene for thyroid stimulating hormone
             (beta), the gene for tetraspan 2 (TSPAN-2), a novel gene
             and one CpG island, complete sequence
          Length = 139563

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   cagggccaaaattttatctc 455
             ||||||||||||||||||||
Sbjct: 27469 cagggccaaaattttatctc 27488

>gb|AC104299.2| Homo sapiens chromosome 3 clone RP11-129K20, complete sequence
          Length = 181444

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   attgatagataacaatacaa 128
             ||||||||||||||||||||
Sbjct: 71080 attgatagataacaatacaa 71099

>gb|S70586.1|S70586S1 Homo sapiens thyroid-stimulating hormone beta subunit (TSHB) gene,
           partial sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 cagggccaaaattttatctc 455
           ||||||||||||||||||||
Sbjct: 611 cagggccaaaattttatctc 630

>emb|Z73103.1|CEC08F8 Caenorhabditis elegans Cosmid C08F8, complete sequence
          Length = 32677

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aaaaactagatatcacatga 155
             ||||||||||||||||||||
Sbjct: 14151 aaaaactagatatcacatga 14170

>gb|M23981.1|HUMTSHBA1 Human thyrotropin beta subunit gene, exon 1
          Length = 1532

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 cagggccaaaattttatctc 455
           ||||||||||||||||||||
Sbjct: 611 cagggccaaaattttatctc 630


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,310,227
Number of Sequences: 3902068
Number of extensions: 4310227
Number of successful extensions: 90419
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90315
Number of HSP's gapped (non-prelim): 104
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)