ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEPA2_RHOBA (Q7UE01) GTP-binding protein lepA2 30 1.5
2AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int... 29 3.4
3PLD_STRAT (Q53728) Phospholipase D precursor (EC 3.1.4.4) (Choli... 28 4.4
4GRP78_APLCA (Q16956) 78 kDa glucose-regulated protein precursor ... 28 7.5
5GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 pre... 27 9.8

>LEPA2_RHOBA (Q7UE01) GTP-binding protein lepA2|
          Length = 598

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 57  WPQPNTVDSIQEDAYIC*IVCPQNWVRPSEIETVVQYTITRDETTNY 197
           WP P+T+DS+ E      I+ P+ +V P  +  + +   +  +T NY
Sbjct: 390 WPDPSTIDSVSEPYIKAQILIPEEYVGP--VMELCREHRSESQTMNY 434



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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 131 GKAIRNRNRSSVHN-YKG*NNQLHVTRFR*TSTRKEKNSRACSHP*RYPTDHQ 286
           GK    RN++S +N Y+  NN+   + F   + +  KN R  +HP  +P   Q
Sbjct: 268 GKVQSTRNKNSSNNRYESSNNRKKKSPFSAQNYKVTKNKRVQTHPLDFPRSSQ 320



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>PLD_STRAT (Q53728) Phospholipase D precursor (EC 3.1.4.4) (Choline|
           phosphatase)
          Length = 556

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
 Frame = -1

Query: 119 AHDLADIGIFLYGI-------YCIWLWPYLCTDDDDPAKRWI 15
           AH ++D+ + L G        Y   LW + C +  DPAK W+
Sbjct: 242 AHPVSDVDMALSGPAAASAGKYLDTLWDWTCRNASDPAKVWL 283



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>GRP78_APLCA (Q16956) 78 kDa glucose-regulated protein precursor (GRP 78) (BiP)|
           (Protein 1603)
          Length = 667

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 220 FNKKRKKFQGLLTP-LTVPYRSSGAFSPPLGFDQ 318
           FN+K+ + +G++ P +T  Y  SG   PP G ++
Sbjct: 625 FNEKKTELEGIVQPIMTKLYEQSGGAPPPSGEEE 658



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>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable|
            G-protein coupled receptor 158-like 1)
          Length = 2367

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
 Frame = +3

Query: 114  VCPQNWVRPSEIETVVQYTI---------TRDETTNYT*HVSGKLQQEKKKIPG 248
            VCPQ  +RP   E     T          TR+E T+      G+ Q++K+K+PG
Sbjct: 1572 VCPQEDLRPEAQEATPAKTEICPWEVNERTREEWTSAQVPRGGESQKDKEKMPG 1625


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,522,153
Number of Sequences: 219361
Number of extensions: 956657
Number of successful extensions: 2155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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