ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29c04 |
|---|---|
| Clone Library Name | barley_pub |
>MATK_SPIOL (Q9M3N0) Maturase K (Intron maturase)| Length = 505 Score = 31.6 bits (70), Expect = 0.89 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = +3 Query: 165 YHQSLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTR 320 Y +LITPK+ RN++L++ Y L +C+ +FLC +SSY R Sbjct: 184 YRNLNSLITPKELISFLKKRNQRLFLFLYNL------HVCEYESLFVFLCNQSSYLR 234
>MATK_AUCJA (Q8MC94) Maturase K (Intron maturase)| Length = 504 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Frame = +3 Query: 165 YHQSLTLITPKK-----TNRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCT 329 Y +LITPKK + +N++L+ Y +C+ +FLC +SSY R + Sbjct: 183 YRNWNSLITPKKPSSSFSKKNQRLFFFLYNA------HVCEYESIFVFLCNQSSYLRSTS 236 Query: 330 S 332 S Sbjct: 237 S 237
>MATK_EICCR (Q9GHB1) Maturase K (Intron maturase)| Length = 504 Score = 30.8 bits (68), Expect = 1.5 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = +3 Query: 54 VPHPCWMHMILLWIHTILKHIFPEKKTKPTKTILG*RYHQSLTLITPKK-----TNRNEK 218 +PHP M +++ IL+ P+ + + +YH +LITPKK + N++ Sbjct: 150 IPHPIHMXILV----QILQSRSPDAPSLHFLRLFLHQYHNWNSLITPKKSISVISKENKR 205 Query: 219 LYILSYPL*PF*LHCICKIPFYLIFLCVKSSY 314 L+ Y I + F L+FL +SSY Sbjct: 206 LFXXLYN------SYISECEFLLVFLRKQSSY 231
>MATK_MALDO (Q4LAM6) Maturase K (Intron maturase)| Length = 485 Score = 29.6 bits (65), Expect = 3.4 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Frame = +3 Query: 51 WVPHPCWMHMILLWIHTILKHIFPEKKTKPTKTILG*RYHQSLTLITPKK---TNRNEKL 221 WV P +H++ L++H Y +LITPKK + N +L Sbjct: 166 WVKDPSSLHLLRLFLH---------------------EYSNWNSLITPKKIIFSKSNPRL 204 Query: 222 YILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCTS 332 ++L Y +C+ L+FL +SS+ R +S Sbjct: 205 FLLLYN------SHVCEYESILLFLRNQSSHLRLTSS 235
>MATK_SAXPU (Q33142) Maturase K (Intron maturase) (Fragment)| Length = 353 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = +3 Query: 174 SLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCTS 332 SL TPKK+ RN++L+++ Y +C+ IF+C +SS+ R +S Sbjct: 190 SLITPTPKKSISIVSKRNQRLFLILYN------SYVCEYESIFIFICNQSSHLRSISS 241
>MATK_SILLA (Q589A9) Maturase K (Intron maturase)| Length = 503 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 165 YHQSLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTR 320 YH +L PKK+ RN++L++ Y +C+ L F+C +SS+ R Sbjct: 182 YHNWNSLFIPKKSIYFFFKRNQRLFLFLYNF------HVCEYESILFFICNQSSHLR 232
>MATK_SCHTR (Q95E84) Maturase K (Intron maturase)| Length = 509 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = +3 Query: 165 YHQSLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTR 320 Y +LITP+K+ RN++L++ Y +C+ +FLC +SS+ R Sbjct: 186 YRNWNSLITPQKSISIFSKRNQRLFLFLYNF------HVCEYESIFVFLCNQSSHLR 236
>MATK_MAIPO (Q95ED6) Maturase K (Intron maturase)| Length = 511 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = +3 Query: 165 YHQSLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTR 320 Y +LITP+K+ RN++L++ Y +C+ +FLC +SS+ R Sbjct: 186 YRNWNSLITPQKSISFFSKRNQRLFLFLYNF------YVCEYESIFLFLCNQSSHLR 236
>MATK_ADEFA (Q8WJR5) Maturase K (Intron maturase)| Length = 504 Score = 28.5 bits (62), Expect = 7.6 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Frame = +3 Query: 51 WVPHPCWMHMILLWIHTILKHIFPEKKTKPTKTILG*RYHQSLTLITPKK---TNRNEKL 221 WV P +H++ L++H Y+ +LITP K + N +L Sbjct: 166 WVKDPSSLHLLRLFLH---------------------EYYNLNSLITPNKFIFSKSNPRL 204 Query: 222 YILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCTS 332 ++L Y +C+ L+F+ +SS+ R +S Sbjct: 205 FLLLYN------SHVCEYESILLFIRNQSSHLRLTSS 235
>MATK_AMOTI (Q8MED5) Maturase K (Intron maturase)| Length = 512 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +3 Query: 165 YHQSLTLITPKKTN------RNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQC 326 YH LITPKK+N N +L++ Y + + L+FL +SSY R Sbjct: 189 YHNWNNLITPKKSNYYGFSKENPRLFLFLYN------SYVVECESILVFLRKQSSYLRST 242 Query: 327 TS 332 +S Sbjct: 243 SS 244
>MATK_CHEBH (Q5J2X4) Maturase K (Intron maturase)| Length = 505 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +3 Query: 165 YHQSLTLITPKKT-----NRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTR 320 Y +LITP + RN++L++ Y +C+ +FLC +SSY R Sbjct: 184 YRNLNSLITPNQLISFLKKRNQRLFLFLYNF------HVCEYESLFVFLCNQSSYLR 234
>MATK_GYMDI (Q5YJX3) Maturase K (Intron maturase)| Length = 499 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 180 TLITPKK-----TNRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCTS 332 +LITPKK + N +L++ Y +C+ LIFL KSSY R +S Sbjct: 188 SLITPKKWISTFSKSNPRLFLFLYNF------YVCEYESILIFLRNKSSYLRLTSS 237
>MATK_GLETR (Q5YK53) Maturase K (Intron maturase)| Length = 499 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 180 TLITPKK-----TNRNEKLYILSYPL*PF*LHCICKIPFYLIFLCVKSSYTRQCTS 332 +LITPKK + N +L++ Y +C+ LIFL KSSY R +S Sbjct: 188 SLITPKKWISTFSKSNPRLFLFLYNF------YVCEYESILIFLRNKSSYLRLTSS 237
>ATG16_KLULA (Q6CPX2) Autophagy protein 16| Length = 126 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 10/73 (13%) Frame = +2 Query: 95 THNFE--AHLSGEKNQTNQDNLGLTISSKPNLNYT*ENKQERKTIHIIVPTMTL------ 250 +H FE + LSG+ + N+D L L S K + E ++E + +H ++ Sbjct: 20 SHLFETVSLLSGDNEEDNEDQLRLKNSIKNLREHLTEKEEEIRQLHDVISVKNRDAERLN 79 Query: 251 --LVTLHLQNSIL 283 L++++++N++L Sbjct: 80 DELISINIENNLL 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,616,941 Number of Sequences: 219361 Number of extensions: 1344559 Number of successful extensions: 2888 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2888 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
