ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_RAT (P60570) Pannexin-1 30 2.4
2PANX1_PONPY (Q5REE3) Pannexin-1 30 2.4
3PANX1_MOUSE (Q9JIP4) Pannexin-1 30 2.4
4PANX1_HUMAN (Q96RD7) Pannexin-1 30 2.4
5EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... 30 3.1
6RADA_CERSY (O93748) DNA repair and recombination protein radA 30 3.1
7SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor 29 6.9

>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex|
           component Sec5)
          Length = 884

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 305 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTHARCSIPL 451
           G +F KW   P  +S + +  +L  + SLI++  +N FS TH +  + L
Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTHVQPLVEL 543



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>RADA_CERSY (O93748) DNA repair and recombination protein radA|
          Length = 369

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -3

Query: 463 KAKRERDGTAGVSTAEQILKGGIDQAGAKNKS-----SEDGSRGEPQRP 332
           KAK + DG  GV     I   GID A A+ +      SE    GEP  P
Sbjct: 318 KAKAKADGPEGVDATPAIEPEGIDTAAAEPEDIGTIVSESADAGEPADP 366



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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 32   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 208
            YK+Y  ++ S+ +++       LPE  V  K+ TS+       ++F+ AG GP    +Q 
Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795

Query: 209  YFHLLAVGFINFLAFN 256
              H  A G  +FLAF+
Sbjct: 1796 RTHQAAPGAPSFLAFS 1811


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,120,482
Number of Sequences: 219361
Number of extensions: 963055
Number of successful extensions: 2679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2677
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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