Clone Name | rbastl29c03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PANX1_RAT (P60570) Pannexin-1 | 30 | 2.4 | 2 | PANX1_PONPY (Q5REE3) Pannexin-1 | 30 | 2.4 | 3 | PANX1_MOUSE (Q9JIP4) Pannexin-1 | 30 | 2.4 | 4 | PANX1_HUMAN (Q96RD7) Pannexin-1 | 30 | 2.4 | 5 | EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... | 30 | 3.1 | 6 | RADA_CERSY (O93748) DNA repair and recombination protein radA | 30 | 3.1 | 7 | SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor | 29 | 6.9 |
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>PANX1_RAT (P60570) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_PONPY (Q5REE3) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_MOUSE (Q9JIP4) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_HUMAN (Q96RD7) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex| component Sec5) Length = 884 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +2 Query: 305 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTHARCSIPL 451 G +F KW P +S + + +L + SLI++ +N FS TH + + L Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTHVQPLVEL 543
>RADA_CERSY (O93748) DNA repair and recombination protein radA| Length = 369 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Frame = -3 Query: 463 KAKRERDGTAGVSTAEQILKGGIDQAGAKNKS-----SEDGSRGEPQRP 332 KAK + DG GV I GID A A+ + SE GEP P Sbjct: 318 KAKAKADGPEGVDATPAIEPEGIDTAAAEPEDIGTIVSESADAGEPADP 366
>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor| Length = 2213 Score = 28.9 bits (63), Expect = 6.9 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 32 YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 208 YK+Y ++ S+ +++ LPE V K+ TS+ ++F+ AG GP +Q Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795 Query: 209 YFHLLAVGFINFLAFN 256 H A G +FLAF+ Sbjct: 1796 RTHQAAPGAPSFLAFS 1811 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,120,482 Number of Sequences: 219361 Number of extensions: 963055 Number of successful extensions: 2679 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2677 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)