Clone Name | rbastl29c02 |
---|---|
Clone Library Name | barley_pub |
>emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on chromosome 13 Contains a mitochondrial import receptor Tom22 pseudogene, complete sequence Length = 60159 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 aagataaatgcccttgttctccctc 250 |||||||||||| |||||||||||| Sbjct: 50666 aagataaatgcctttgttctccctc 50642
>emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 on chromosome 13. Contains a novel gene, a mitochondrial import receptor TOM22 pseudogene, the 5' end of the KL gene for klotho, ESTs, STSs and a CpG island, complete sequence Length = 146810 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 aagataaatgcccttgttctccctc 250 |||||||||||| |||||||||||| Sbjct: 82429 aagataaatgcctttgttctccctc 82405
>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete sequence Length = 195598 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 acaaatatttacatttctgc 223 |||||||||||||||||||| Sbjct: 62703 acaaatatttacatttctgc 62684
>ref|XM_709233.1| Candida albicans SC5314 putative farnesyl carboxyl methyltransferase (CaO19.120), mRNA Length = 774 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggattttggttatattgtat 191 |||||||||||||||||||| Sbjct: 577 ggattttggttatattgtat 596
>ref|XM_708958.1| Candida albicans SC5314 putative farnesyl carboxyl methyltransferase (CaO19.7767), mRNA Length = 771 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggattttggttatattgtat 191 |||||||||||||||||||| Sbjct: 574 ggattttggttatattgtat 593
>gb|AY464121.1| Sus scrofa insulin-like growth factor-binding protein 3 gene, complete cds Length = 12257 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tgtgcaaagcttcgcaacgt 171 |||||||||||||||||||| Sbjct: 3862 tgtgcaaagcttcgcaacgt 3881
>gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, complete sequence Length = 238123 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cggaactggagataatgaaa 356 |||||||||||||||||||| Sbjct: 150119 cggaactggagataatgaaa 150138
>gb|AC117639.7| Mus musculus chromosome 10, clone RP23-225H6, complete sequence Length = 217522 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gttttaactaaccgtatgtcacaa 122 |||||| ||||||||||||||||| Sbjct: 178731 gttttatctaaccgtatgtcacaa 178708
>gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, complete sequence Length = 125933 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tcacaactgtatacaatgaa 136 |||||||||||||||||||| Sbjct: 109378 tcacaactgtatacaatgaa 109397
>gb|AC099497.2| Homo sapiens chromosome 5 clone RP11-139A10, complete sequence Length = 165884 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tcacaactgtatacaatgaa 136 |||||||||||||||||||| Sbjct: 20353 tcacaactgtatacaatgaa 20372
>gb|AF028810.2|AF028810 Rhizobium leguminosarum bv. viciae VF39 acidic exopolysaccharide biosynthesis gene cluster, complete sequence Length = 20766 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 gcgcgaaatctggctgatgc 439 |||||||||||||||||||| Sbjct: 10648 gcgcgaaatctggctgatgc 10629
>gb|AC097717.3| Homo sapiens BAC clone RP11-650N19 from 2, complete sequence Length = 142978 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 agataatgaaaagatgcaca 365 |||||||||||||||||||| Sbjct: 49297 agataatgaaaagatgcaca 49278
>gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, complete sequence Length = 170871 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ttttccagattgttttaact 107 |||||||||||||||||||| Sbjct: 121913 ttttccagattgttttaact 121894
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 gttttaactaaccgtatgtcacaa 122 |||||| ||||||||||||||||| Sbjct: 145976 gttttatctaaccgtatgtcacaa 145999
>emb|AL935058.12| Mouse DNA sequence from clone RP23-409M4 on chromosome 2, complete sequence Length = 143502 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 caatgaaacaaagagttcat 149 |||||||||||||||||||| Sbjct: 97026 caatgaaacaaagagttcat 97007
>gb|AF040104.1|AF040104 Rhizobium leguminosarum bv. trifolii polysaccharide export protein (pssL), polysaccharide polymerization protein (pssK), and glycosyl transferase homolog (pssI) genes, complete cds Length = 4527 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 gcgcgaaatctggctgatgc 439 |||||||||||||||||||| Sbjct: 2336 gcgcgaaatctggctgatgc 2317 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,113,576 Number of Sequences: 3902068 Number of extensions: 5113576 Number of successful extensions: 141575 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141531 Number of HSP's gapped (non-prelim): 44 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)