ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on ch... 42 1.6
2emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 ... 42 1.6
3gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.4
4ref|XM_709233.1| Candida albicans SC5314 putative farnesyl carbo... 40 6.4
5ref|XM_708958.1| Candida albicans SC5314 putative farnesyl carbo... 40 6.4
6gb|AY464121.1| Sus scrofa insulin-like growth factor-binding pro... 40 6.4
7gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, c... 40 6.4
8gb|AC117639.7| Mus musculus chromosome 10, clone RP23-225H6, com... 40 6.4
9gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, compl... 40 6.4
10gb|AC099497.2| Homo sapiens chromosome 5 clone RP11-139A10, comp... 40 6.4
11gb|AF028810.2|AF028810 Rhizobium leguminosarum bv. viciae VF39 a... 40 6.4
12gb|AC097717.3| Homo sapiens BAC clone RP11-650N19 from 2, comple... 40 6.4
13gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, comple... 40 6.4
14gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc... 40 6.4
15emb|AL935058.12| Mouse DNA sequence from clone RP23-409M4 on chr... 40 6.4
16gb|AF040104.1|AF040104 Rhizobium leguminosarum bv. trifolii poly... 40 6.4

>emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on chromosome 13 Contains a
             mitochondrial import receptor Tom22 pseudogene, complete
             sequence
          Length = 60159

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 226   aagataaatgcccttgttctccctc 250
             |||||||||||| ||||||||||||
Sbjct: 50666 aagataaatgcctttgttctccctc 50642



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>emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 on chromosome 13. Contains a
             novel gene, a mitochondrial import receptor TOM22
             pseudogene, the 5' end of the KL gene for klotho, ESTs,
             STSs and a CpG island, complete sequence
          Length = 146810

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 226   aagataaatgcccttgttctccctc 250
             |||||||||||| ||||||||||||
Sbjct: 82429 aagataaatgcctttgttctccctc 82405



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>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete
             sequence
          Length = 195598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   acaaatatttacatttctgc 223
             ||||||||||||||||||||
Sbjct: 62703 acaaatatttacatttctgc 62684



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>ref|XM_709233.1| Candida albicans SC5314 putative farnesyl carboxyl
           methyltransferase (CaO19.120), mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 ggattttggttatattgtat 191
           ||||||||||||||||||||
Sbjct: 577 ggattttggttatattgtat 596



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>ref|XM_708958.1| Candida albicans SC5314 putative farnesyl carboxyl
           methyltransferase (CaO19.7767), mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 ggattttggttatattgtat 191
           ||||||||||||||||||||
Sbjct: 574 ggattttggttatattgtat 593



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>gb|AY464121.1| Sus scrofa insulin-like growth factor-binding protein 3 gene,
            complete cds
          Length = 12257

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  tgtgcaaagcttcgcaacgt 171
            ||||||||||||||||||||
Sbjct: 3862 tgtgcaaagcttcgcaacgt 3881



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>gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, complete sequence
          Length = 238123

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    cggaactggagataatgaaa 356
              ||||||||||||||||||||
Sbjct: 150119 cggaactggagataatgaaa 150138



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>gb|AC117639.7| Mus musculus chromosome 10, clone RP23-225H6, complete sequence
          Length = 217522

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     gttttaactaaccgtatgtcacaa 122
              |||||| |||||||||||||||||
Sbjct: 178731 gttttatctaaccgtatgtcacaa 178708



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>gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, complete sequence
          Length = 125933

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcacaactgtatacaatgaa 136
              ||||||||||||||||||||
Sbjct: 109378 tcacaactgtatacaatgaa 109397



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>gb|AC099497.2| Homo sapiens chromosome 5 clone RP11-139A10, complete sequence
          Length = 165884

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tcacaactgtatacaatgaa 136
             ||||||||||||||||||||
Sbjct: 20353 tcacaactgtatacaatgaa 20372



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>gb|AF028810.2|AF028810 Rhizobium leguminosarum bv. viciae VF39 acidic exopolysaccharide
             biosynthesis gene cluster, complete sequence
          Length = 20766

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   gcgcgaaatctggctgatgc 439
             ||||||||||||||||||||
Sbjct: 10648 gcgcgaaatctggctgatgc 10629



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>gb|AC097717.3| Homo sapiens BAC clone RP11-650N19 from 2, complete sequence
          Length = 142978

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   agataatgaaaagatgcaca 365
             ||||||||||||||||||||
Sbjct: 49297 agataatgaaaagatgcaca 49278



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>gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, complete sequence
          Length = 170871

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     ttttccagattgttttaact 107
              ||||||||||||||||||||
Sbjct: 121913 ttttccagattgttttaact 121894



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>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     gttttaactaaccgtatgtcacaa 122
              |||||| |||||||||||||||||
Sbjct: 145976 gttttatctaaccgtatgtcacaa 145999



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>emb|AL935058.12| Mouse DNA sequence from clone RP23-409M4 on chromosome 2, complete
             sequence
          Length = 143502

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   caatgaaacaaagagttcat 149
             ||||||||||||||||||||
Sbjct: 97026 caatgaaacaaagagttcat 97007



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>gb|AF040104.1|AF040104 Rhizobium leguminosarum bv. trifolii polysaccharide export protein
            (pssL), polysaccharide polymerization protein (pssK), and
            glycosyl transferase homolog (pssI) genes, complete cds
          Length = 4527

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  gcgcgaaatctggctgatgc 439
            ||||||||||||||||||||
Sbjct: 2336 gcgcgaaatctggctgatgc 2317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,113,576
Number of Sequences: 3902068
Number of extensions: 5113576
Number of successful extensions: 141575
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141531
Number of HSP's gapped (non-prelim): 44
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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