ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 m... 30 1.7
2OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703) 30 2.3
3GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; ... 30 2.3
4HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA 29 5.0
5SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC)... 28 6.6
6R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 6.6
7R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 6.6
8R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 6.6
9R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 6.6
10COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 28 6.6
11FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.... 28 8.6
12TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-... 28 8.6

>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A|
           precursor
          Length = 928

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 278 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGSTKL 418
           N   A+WT+DT        KT+ET     ND +W     G+I S +L
Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHSIQL 417



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>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)|
          Length = 309

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 65  AVIRHGKWYICWMLLATSTVG 3
           AV+  G W +CWM+LA+S  G
Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152



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>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30] (Fragment)
          Length = 313

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 266 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 370
           Y W NQ P+S++    ++I L +    T Q  W+D
Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260



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>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA|
          Length = 386

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 1   RPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTK 171
           RPT  + N +  I+  P   C +       N T         PV   +L  +E+F T T 
Sbjct: 278 RPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTLTI 334

Query: 172 FQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 264
           F  KI    T+  +       RP  S PT+S
Sbjct: 335 FADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365



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>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)|
          Length = 702

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 197 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 51
           EY + +V +  FVC  KS   P  C+ +GRA   H   VL+F   SA  RH
Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402



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>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 200  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 38   ICW 30
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 200  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 38   ICW 30
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 200  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 38   ICW 30
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 200  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 38   ICW 30
            + +
Sbjct: 3116 VMY 3118



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>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragment)
          Length = 340

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 180 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 67
           G  FC R + FSF     + W S+++ L + + +P   GGV
Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209



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>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
            Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
            (EC 1.1.1.100) (Beta-ketoacyl reductase);
            3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
            (Beta-ketoacyl synth
          Length = 1885

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 89   HTDNVDNMLDQYQYTLWEKENSST 160
            + DNVD +L+QY+Y L+   +  T
Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637



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>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA|
           phosphodiesterase 1)
          Length = 608

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -3

Query: 317 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 138
           +S C   + +  G+   ++M+   EEG ++  ++ N+   ++          +W S L+P
Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303

Query: 137 RECTGTGRA 111
           R   GT ++
Sbjct: 304 RIADGTHKS 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,699,583
Number of Sequences: 219361
Number of extensions: 1529459
Number of successful extensions: 4041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4038
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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