ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 3.6
2gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 3.6
3gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosom... 40 3.6
4gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 40 3.6
5gb|AF243083.1|F243081S03 Homo sapiens intrinsic factor-vitamin B... 40 3.6
6gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C... 40 3.6
7gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B... 40 3.6
8gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3... 40 3.6
9gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p... 40 3.6

>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tctgtcacagcatatatatt 36
              ||||||||||||||||||||
Sbjct: 190345 tctgtcacagcatatatatt 190364



to top

>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     tctgtcacagcatatatatt 36
              ||||||||||||||||||||
Sbjct: 108288 tctgtcacagcatatatatt 108269



to top

>gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosome 18, complete sequence
          Length = 201478

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     tctgtcacagcatatatatt 36
              ||||||||||||||||||||
Sbjct: 185109 tctgtcacagcatatatatt 185090



to top

>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tgaacctctcctttcaatgg 125
             ||||||||||||||||||||
Sbjct: 50030 tgaacctctcctttcaatgg 50011



to top

>gb|AF243083.1|F243081S03 Homo sapiens intrinsic factor-vitamin B12 receptor (CUBN) gene,
           exons 5 and 6
          Length = 1728

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 tgaacctctcctttcaatgg 125
           ||||||||||||||||||||
Sbjct: 440 tgaacctctcctttcaatgg 421



to top

>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence
          Length = 151142

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgtcacagcatatatattct 38
             ||||||||||||||||||||
Sbjct: 91041 tgtcacagcatatatattct 91060



to top

>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence
          Length = 167220

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgtcacagcatatatattct 38
             ||||||||||||||||||||
Sbjct: 54326 tgtcacagcatatatattct 54345



to top

>gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3p, complete sequence
          Length = 184058

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgtcacagcatatatattct 38
             ||||||||||||||||||||
Sbjct: 11455 tgtcacagcatatatattct 11436



to top

>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence
          Length = 185496

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgtcacagcatatatattct 38
             ||||||||||||||||||||
Sbjct: 19991 tgtcacagcatatatattct 20010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,079,509
Number of Sequences: 3902068
Number of extensions: 2079509
Number of successful extensions: 35453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35437
Number of HSP's gapped (non-prelim): 16
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top