ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29b07 |
|---|---|
| Clone Library Name | barley_pub |
>DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A)| (Dynamin-like protein 6) Length = 914 Score = 81.3 bits (199), Expect = 1e-15 Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 10/95 (10%) Frame = -1 Query: 475 TRQLSIHDNRAAA-SSYSNDSPEAESPRTPG-RPGEDWRSAFDSAANGPAPNIE---XXX 311 TRQLSIHDNRAAA SSYS++S SPR G G+DW +AF+SAANGP+ ++ Sbjct: 812 TRQLSIHDNRAAAASSYSDNSGTESSPRASGGSSGDDWMNAFNSAANGPSDSLSKYGSGG 871 Query: 310 XXXXXXXXSENGD---PNSSSRR--TPNRLPPAPP 221 ++NGD P S S R TPNRLPPAPP Sbjct: 872 HSRRYSDPAQNGDAASPGSGSNRRTTPNRLPPAPP 906
>DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B)| (Dynamin-like protein 3) Length = 920 Score = 76.3 bits (186), Expect = 4e-14 Identities = 47/95 (49%), Positives = 59/95 (62%), Gaps = 9/95 (9%) Frame = -1 Query: 475 TRQLSIHDNRAAA-SSYSNDSPEAESPRTPG-RPGEDWRSAFDSAANGP--APNIEXXXX 308 TRQLSIHDNRAAA SS+S++S SPRT G GEDW +AF++AA+GP Sbjct: 819 TRQLSIHDNRAAAASSWSDNSGTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRYGSGGH 878 Query: 307 XXXXXXXSENGDPNSSS-----RRTPNRLPPAPPR 218 ++NG+ +S S R TPNRLPPAPP+ Sbjct: 879 SRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPPQ 913
>MRAY_BDEBA (Q6MIF7) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 358 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +1 Query: 259 CWSWDPHFQSARDYRHFSTLIRCSGLGHLLQNRRLTSSPHLGGRVSEGSQLPDCHL 426 CW W PHF +HF IR G +++ +P +GG + S L C L Sbjct: 37 CWIWGPHFIKRLQLKHFGQAIRDDG---PQTHKKKAGTPTMGGGLILLSTLIPCLL 89
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 32.7 bits (73), Expect = 0.49 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -1 Query: 466 LSIHDNRAAASSYSNDSPEAESPRTPGRPGEDWRSAFDS 350 LS+H RA A++++ND +AE + +P D+ + FDS Sbjct: 137 LSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLN-FDS 174
>AGLU_ASPNG (P56526) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)| Length = 985 Score = 32.0 bits (71), Expect = 0.83 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Frame = +2 Query: 77 PLDQGARSIHPI--------SNPLHQSHHPIIRNRACA*QEYIIINHGY---*SARLVSR 223 P+DQ HP + + S+ P+ + A A Q+YI ++HG S L Sbjct: 229 PIDQNLYGQHPFYLDTRYYKGDRQNGSYIPVKSSEADASQDYISLSHGVFLRNSHGLEIL 288 Query: 224 WRWRQPIWRASAAGVGIPIFRAPATIGTSR 313 R ++ IWR G+ + + PA +R Sbjct: 289 LRSQKLIWRTLGGGIDLTFYSGPAPADVTR 318
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -1 Query: 466 LSIHDNRAAASSYSNDSPEAESPRTPGRPGEDWRSAFDSAAN 341 LSIH R ++++ND+ EA+ P+ + D+ + FDS +N Sbjct: 136 LSIHQKRTQVATWANDALEAKLPKAKTKASSDYLN-FDSDSN 176
>E2AK3_RAT (Q9Z1Z1) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1108 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -1 Query: 259 SRRTPNRLPPAPPRY*SC*LVSMIYYYVFLLGTRSVSDNWVVRLVERI*DWMNRASALVE 80 +R T +RL P+ P+ +Y Y+ + R E + DWMNR ++ + Sbjct: 860 TRNTVDRLQPSSPK---------VYLYIQMQLCRK----------ENLKDWMNRRCSMED 900 Query: 79 RFHRQCV 59 R HR C+ Sbjct: 901 REHRVCL 907
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +3 Query: 225 GAGGNRFGVRRLLELGSPFSERPRLSALLDLDSMFGAGPFAAESKADL--QSSPGRPGV 395 G G R G RRLL LG P RP + LL L S GA P A + L ++SP R GV Sbjct: 83 GGGAFRPGSRRLLGLGGP--PRPFVVVLLPLASP-GAPPAAPTRASPLGARASPPRSGV 138
>GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-protein coupled| receptor R35) Length = 723 Score = 30.8 bits (68), Expect = 1.9 Identities = 29/78 (37%), Positives = 33/78 (42%) Frame = +3 Query: 222 GGAGGNRFGVRRLLELGSPFSERPRLSALLDLDSMFGAGPFAAESKADLQSSPGRPGVRG 401 GG GG L EL + S RP + L DS A P A + P GVRG Sbjct: 439 GGGGG-----AALAELSTTDSARPGPAGLSATDS---ARPGPAGFSTTDSARPSAAGVRG 490 Query: 402 LSASGLSFE*EEAAARLS 455 +ASGL E RLS Sbjct: 491 EAASGLGRTVEGPERRLS 508
>DHH1_ASHGO (Q75BS4) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 484 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = -2 Query: 438 LPLIQMTVRKLRALGHPAAQVRTGGQPSILQQMAQPRTSNQGREVP 301 L +Q R + + HP Q + GG P + Q QP ++Q + P Sbjct: 415 LDTMQGNARAAQQMPHPQQQAQLGGMPQPIPQQIQPPLAHQQAQPP 460
>SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin)| Length = 803 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 295 DYRHFSTLIRCSGLGHLLQNRRLTSSPHLGGRV-SEGSQLPDCHLNK 432 ++ ++S + G GH+++ R +T P GG V E Q C L K Sbjct: 669 EWSYWSECNKSCGKGHMIRTRMITMEPQFGGAVCPETVQRKKCRLRK 715
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 445 AAASSYSNDSPEAESPRTPG 386 A+ Y N SPEA SPR+PG Sbjct: 898 ASDGQYENQSPEATSPRSPG 917
>PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1| protein) Length = 410 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = +1 Query: 67 VDETSRPRRSLYSSNLKSAPPISPPNYQKQSVCLARIHNNKSWILISTTSISVALAATDL 246 V+E S L SS+ + P P N + +H N+ L+ +S ++ DL Sbjct: 134 VEECSNAANLLSSSSSRGDIPCIPKNQEPTDAKALNVHENE---LLKDNKVSKQISKDDL 190 Query: 247 ACVGC 261 C C Sbjct: 191 LCSAC 195
>RIHA_SHISS (Q3Z4E1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P ++ + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAE 164
>RIHA_SHIFL (Q83LY1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P ++ + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAE 164
>RIHA_SALTY (Q8ZQY4) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P + + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMALGNWTPAAE 164
>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P + + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMALGNWTPAAE 164
>RIHA_ECOLI (P41409) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P ++ + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAE 164
>RIHA_ECO57 (Q8XBL8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P ++ + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAE 164
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Frame = -1 Query: 376 EDWRSAFDSAANGPAPNIEXXXXXXXXXXXSENGDP---NSSSRRTPNRLPPAPP 221 ++W + D A P P E E D S S P +PPAPP Sbjct: 384 QEWEAEQDGAPAAPVPTEEARRGAPVPATALEEDDEVQITSVSTSVPRSVPPAPP 438
>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P + + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMGLGNWTPAAE 164
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 29.3 bits (64), Expect = 5.4 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Frame = -1 Query: 445 AAASSYSNDSPEAESPRTPGRPGEDWRSAFDSAANG----------PAPNIEXXXXXXXX 296 AAA++ + A P G PG + S +AA P+P Sbjct: 684 AAATATATVKRPARRPEAEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARA 743 Query: 295 XXXSENGDPNSSSRR--------TPNRLPPAPPR 218 + + P +RR TP R PPAP R Sbjct: 744 AGGAASPGPGGGARRAAPGTGGPTPGRSPPAPAR 777
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Frame = -1 Query: 376 EDWRSAFDSAANGPAPNIEXXXXXXXXXXXSENGDP---NSSSRRTPNRLPPAPP 221 ++W + D A P P E E D S S P +PPAPP Sbjct: 384 QEWEAEQDGAPTAPVPVEEARRGAPVPATALEEDDEVQITSVSTSVPRSVPPAPP 438
>PROB_SCHPO (O13810) Probable glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl| kinase) (GK) Length = 402 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -2 Query: 438 LPLIQMTVRKLRALGHPAAQVRTGGQPSILQQMAQPRTSNQGREVPIVA 292 L LI TV KLR LGH V +GG L+++ P+ ++ V +A Sbjct: 36 LSLIVETVVKLRKLGHNVVLVSSGGIAMGLRRLDLPKRPSKLSAVQAIA 84
>DDL_DEIRA (Q9RXF1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 339 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +2 Query: 209 RLVSRWRWRQP--IWRASAAGVGIPIFRAPATIGTS 310 RL R W+Q RA AA +G P+F PA +G+S Sbjct: 140 RLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSS 175
>RIHA_ECOL6 (Q8FJY8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 429 IQMTVRKLRALGHPAAQVRTGGQPSI-LQQMAQPRTSNQGREVPIVAGALKMGIPTPAAD 253 +++ + LR P V TG Q ++ L + P ++ + I+ GA+ +G TPAA+ Sbjct: 105 VELMAKTLRESEEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAE 164
>ZN101_HUMAN (Q8IZC7) Zinc finger protein 101 (Zinc finger protein HZF12)| Length = 436 Score = 28.9 bits (63), Expect = 7.1 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +1 Query: 403 SQLPDCHLNKRKQ 441 SQ+PDCHLNK+ Q Sbjct: 84 SQIPDCHLNKKSQ 96
>RCOR2_HUMAN (Q8IZ40) REST corepressor 2| Length = 523 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Frame = -1 Query: 376 EDWRSAFDSAANGPAPNIEXXXXXXXXXXXSENGDP---NSSSRRTPNRLPPAPP 221 ++W + D A P P E E D S S P +PPAPP Sbjct: 384 QEWEAEQDGAPGAPVPMEEARRGAPLPAPALEEDDEVQITSVSTSVPRSVPPAPP 438
>CWC24_ASHGO (Q752S4) Pre-mRNA-splicing factor CWC24| Length = 250 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = -1 Query: 445 AAASSYSNDSPEAESPRTPGRP--GEDWRSA 359 A A +D+P E PR+PG P GE+ R A Sbjct: 217 AGAGDSPDDTPAEEEPRSPGEPAAGEERRGA 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,402,242 Number of Sequences: 219361 Number of extensions: 1612224 Number of successful extensions: 5818 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5700 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
