Clone Name | rbastl29b07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103745.1| Zea mays PCO097601 mRNA sequence Length = 1567 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410 ||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||||||| || Sbjct: 1153 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 1094 Query: 411 tccggactgtcatttgaataagaggaa 437 || | |||||||| |||||||||||| Sbjct: 1093 tcagtgctgtcattagaataagaggaa 1067 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Minus Query: 190 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249 ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || | Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279 Query: 250 tgcgtcggctgctggagttgg 270 |||| ||||||| ||||||| Sbjct: 1278 tgcgccggctgccagagttgg 1258 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 18 ctatatatttctataaacaactc 40 ||||||||||||||||||||||| Sbjct: 1507 ctatatatttctataaacaactc 1485 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 293 gcgactatcggcacttctcgaccttgattc 322 ||||| ||| |||||||||||||||||||| Sbjct: 1220 gcgaccatcagcacttctcgaccttgattc 1191
>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full insert sequence Length = 3307 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410 ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||| Sbjct: 2795 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctcagct 2736 Query: 411 tc 412 || Sbjct: 2735 tc 2734 Score = 48.1 bits (24), Expect = 0.026 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 146 atcagaaacagagcgtg-tgcctagcaagaatacat 180 ||||||||||| ||||| |||||||||||||||||| Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 196 atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255 |||||||||||| || |||||| | || || ||||| || ||||| ||||| || |||| Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906 Query: 256 ggctgctggagttgg 270 |||||| |||||||| Sbjct: 2905 ggctgccggagttgg 2891 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatatttctataaacaactc 40 |||||||||||||||||||| Sbjct: 3149 tatatttctataaacaactc 3130
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 406 ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||| Sbjct: 7680299 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 7680244 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 196 atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255 |||||||||||| || |||||| | || || ||||| || ||||| ||||| ||||||| Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410 Query: 256 ggctgctggagttgg 270 |||||| |||||||| Sbjct: 7680409 ggctgccggagttgg 7680395 Score = 48.1 bits (24), Expect = 0.026 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 146 atcagaaacagagcgtg-tgcctagcaagaatacat 180 ||||||||||| ||||| |||||||||||||||||| Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatatttctataaacaactc 40 |||||||||||||||||||| Sbjct: 7680653 tatatttctataaacaactc 7680634
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_C11 Length = 124827 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 406 ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||| Sbjct: 103554 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 103499 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 196 atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255 |||||||||||| || |||||| | || || ||||| || ||||| ||||| ||||||| Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665 Query: 256 ggctgctggagttgg 270 |||||| |||||||| Sbjct: 103664 ggctgccggagttgg 103650 Score = 48.1 bits (24), Expect = 0.026 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 146 atcagaaacagagcgtg-tgcctagcaagaatacat 180 ||||||||||| ||||| |||||||||||||||||| Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatatttctataaacaactc 40 |||||||||||||||||||| Sbjct: 103908 tatatttctataaacaactc 103889
>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence Length = 858 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410 ||||| || |||||||||||||||||||||| |||| ||||| ||||||||||| ||| Sbjct: 375 gaatcaaaagctgacctccagtcctcacctgagcgggttggtgttcgagggctctcggct 434 Query: 411 tccggactgtcatttgaataagaggaa 437 || | ||||||| |||||||||||| Sbjct: 435 tcagtggtgtcattagaataagaggaa 461 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 190 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249 ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| | Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249 Query: 250 tgcgtcggctgctggagttgg 270 |||| ||||||| ||||||| Sbjct: 250 tgcgccggctgccagagttgg 270
>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence Length = 1254 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410 ||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||||||| || Sbjct: 916 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 857 Query: 411 tc 412 || Sbjct: 856 tc 855 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Minus Query: 190 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249 ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || | Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042 Query: 250 tgcgtcggctgctggagttgg 270 |||| ||||||| ||||||| Sbjct: 1041 tgcgccggctgccagagttgg 1021 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 293 gcgactatcggcacttctcgaccttgattc 322 ||||| ||| |||||||||||||||||||| Sbjct: 983 gcgaccatcagcacttctcgaccttgattc 954
>ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3215 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 338 gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381 |||||||| |||||||||||| || ||||||||||||||||||| Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 2657
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 338 gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381 |||||||| |||||||||||| || ||||||||||||||||||| Sbjct: 30880683 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 30880726 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 agctcgattgtcatggatactaag 466 ||||| |||||||||||||||||| Sbjct: 30881989 agctctattgtcatggatactaag 30882012
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 338 gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381 |||||||| |||||||||||| || ||||||||||||||||||| Sbjct: 64260 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 64303 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 agctcgattgtcatggatactaag 466 ||||| |||||||||||||||||| Sbjct: 65566 agctctattgtcatggatactaag 65589
>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full insert sequence Length = 3215 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 338 gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381 |||||||| |||||||||||| || ||||||||||||||||||| Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 2657
>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein Length = 954 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgattcaactatatatttcta 30 ||||||||||||||||||||| Sbjct: 833 tgattcaactatatatttcta 813
>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end sequence, partial cds Length = 231 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgattcaactatatatttcta 30 ||||||||||||||||||||| Sbjct: 134 tgattcaactatatatttcta 114
>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds Length = 1152 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgattcaactatatatttcta 30 ||||||||||||||||||||| Sbjct: 1102 tgattcaactatatatttcta 1082
>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR Length = 165 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgattcaactatatatttcta 30 ||||||||||||||||||||| Sbjct: 41 tgattcaactatatatttcta 21
>ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 330 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctccaccaatctcaccaccc 141 |||||||||||||||||||| Sbjct: 48 ctccaccaatctcaccaccc 29
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggtggcgctggcggcaaccg 241 |||||||||||||||||||| Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145
>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete cds Length = 729 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctccaccaatctcaccaccc 141 |||||||||||||||||||| Sbjct: 100 ctccaccaatctcaccaccc 81
>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence Length = 157001 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 agaattgattcaactatatatttc 28 |||||||||||||||| ||||||| Sbjct: 41316 agaattgattcaactaaatatttc 41339
>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence Length = 163773 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 agaattgattcaactatatatttc 28 |||||||||||||||| ||||||| Sbjct: 151929 agaattgattcaactaaatatttc 151952
>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone MGC:68557 IMAGE:4031378), complete cds Length = 971 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tgcgcatgcatacacactgt 68 |||||||||||||||||||| Sbjct: 422 tgcgcatgcatacacactgt 441
>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type, 3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete cds Length = 974 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tgcgcatgcatacacactgt 68 |||||||||||||||||||| Sbjct: 421 tgcgcatgcatacacactgt 440
>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4 Contains the 5' end of a novel gene, complete sequence Length = 27299 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gaatacataataataaatca 192 |||||||||||||||||||| Sbjct: 26365 gaatacataataataaatca 26384
>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the 5' end of a novel gene, the gene for a novel protein similar to opioid growth factor receptor and a CpG island, complete sequence Length = 108253 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 atatatttctataaacaactctgg 43 |||||||||||||||| ||||||| Sbjct: 20311 atatatttctataaactactctgg 20334
>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16, complete sequence Length = 59017 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttcaactatatatttctata 32 |||||||||||||||||||| Sbjct: 40475 ttcaactatatatttctata 40456
>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence Length = 184178 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttcaactatatatttctata 32 |||||||||||||||||||| Sbjct: 181477 ttcaactatatatttctata 181496
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cggggctgggccatttgctgcaga 352 ||||||||||||| |||||||||| Sbjct: 771205 cggggctgggccacttgctgcaga 771228
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctccaccaatctcaccaccc 141 |||||||||||||||||||| Sbjct: 8585799 ctccaccaatctcaccaccc 8585818
>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence Length = 186961 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aatacataataataaatcat 193 |||||||||||||||||||| Sbjct: 52428 aatacataataataaatcat 52447
>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94635 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aatacataataataaatcat 193 |||||||||||||||||||| Sbjct: 56035 aatacataataataaatcat 56054
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctccaccaatctcaccaccc 141 |||||||||||||||||||| Sbjct: 17994 ctccaccaatctcaccaccc 18013
>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA Length = 2228 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gaatacataataataaatca 192 |||||||||||||||||||| Sbjct: 2170 gaatacataataataaatca 2189
>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full insert sequence Length = 786 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctccaccaatctcaccaccc 141 |||||||||||||||||||| Sbjct: 144 ctccaccaatctcaccaccc 125
>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02, full insert sequence Length = 239 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatatttctataaacaactc 40 |||||||||||||||||||| Sbjct: 78 tatatttctataaacaactc 59
>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence Length = 198383 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 431 agaggaagcagcagctcgattgtcatgg 458 |||||||||||||||| || |||||||| Sbjct: 113406 agaggaagcagcagctggaatgtcatgg 113433 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,054,543 Number of Sequences: 3902068 Number of extensions: 4054543 Number of successful extensions: 81537 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81319 Number of HSP's gapped (non-prelim): 218 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)