ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29b06 |
|---|---|
| Clone Library Name | barley_pub |
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -3 Query: 458 GEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEW 279 G GLN A++TL N+ +++KT + +F +F+ K + + +IS++ G W Sbjct: 539 GHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTW 598 Query: 278 KFRVKHFSSYGF-GEAEADHLADSL 207 F+V HFS +G E +A+ D L Sbjct: 599 TFKVNHFSIWGLVNEEDAEIDEDDL 623
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 46.2 bits (108), Expect = 4e-05 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Frame = -3 Query: 464 PSGEGLNKAALVTLLNIKCMNRKTDEQYT--QGPRFDKFKEMLVKKAEEQGVEFISFDGA 291 P GEGLN A++TL ++R+T E Q PR+ + + L + + EFI F+ Sbjct: 869 PLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKD---TEFIDFND- 924 Query: 290 KGEWKFRVKHFSSYGFGEAEAD 225 G+W F+V+HFS YG + E + Sbjct: 925 -GKWIFKVQHFSRYGLLDDEEE 945
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 42.4 bits (98), Expect = 6e-04 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = -3 Query: 464 PSGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEM-----LVKKAEEQGVEFISF 300 P GEGLN+ A VTL + + KT + P D+ ++ L + +QG +F + Sbjct: 810 PVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSP--DRLADINYEGRLEAVSRKQGAQFKEY 866 Query: 299 DGAKGEWKFRVKHFSSYGFGEAEAD 225 G W F+V HFS YG +++ + Sbjct: 867 RPETGSWVFKVSHFSKYGLQDSDEE 891
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 42.4 bits (98), Expect = 6e-04 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = -3 Query: 464 PSGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEM-----LVKKAEEQGVEFISF 300 P GEGLN+ A VTL + + KT + P D+ ++ L + +QG +F + Sbjct: 809 PVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSP--DRLADINYEGRLEAVSRKQGAQFKEY 865 Query: 299 DGAKGEWKFRVKHFSSYGFGEAEAD 225 G W F+V HFS YG +++ + Sbjct: 866 RPETGSWVFKVSHFSKYGLQDSDEE 890
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 65 EFLPMFFCTYLFSLKNAQKLH 3 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -3 Query: 422 LNIKC-MNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYG 246 +N KC +N + + + FKE + K AE VE SFD K + R+ +F Y Sbjct: 173 INFKCSVNPSFRPEKAMKIQNEGFKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YE 230 Query: 245 FGEAEADHLADSL*LYR 195 G DH + + Y+ Sbjct: 231 NGCMITDHSLERVVFYK 247
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 53 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 220 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 53 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 220 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 268 TLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSV 396 T NF P P N +N CSS T NL C++C ++ Sbjct: 196 TENFQIPSKPENTVNLNQCSSCDLT------QNLWLCLHCGNI 232
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 Query: 65 EFLPMFFCTYLFSLKNAQKLH 3 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>CDC25_YEAST (P04821) Cell division control protein 25| Length = 1589 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +1 Query: 283 SPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSVFLFMHLMFRRVT 432 SP+ S+ + SSAFF L L ++ P Y + + + H ++ R+T Sbjct: 1276 SPIHMSSSSLPSSASSAFFRLKKLKLLDIDPYTYATQLTVLEHDLYLRIT 1325
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +2 Query: 38 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQ 217 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R + Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRR 149
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -3 Query: 449 LNKAALVTLLNIKCMNRKTDEQYTQGPR--------FDKFKEMLVKKAEEQGVEFISFDG 294 L K LVT ++ + R+ +E + P+ F F +++ +QG+ ++ FDG Sbjct: 1008 LGKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDG 1067 Query: 293 AKGE 282 + Sbjct: 1068 TMSQ 1071
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 211 PCSFIDRCCNCCL 173 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 211 PCSFIDRCCNCCL 173 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 211 PCSFIDRCCNCCL 173 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,587,432 Number of Sequences: 219361 Number of extensions: 1257821 Number of successful extensions: 3788 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3784 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
