ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 168 1e-38
3emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 168 1e-38
4gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence 92 2e-15
5gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence 88 3e-14
6gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence 66 1e-07
7gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds 54 4e-04
8gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, comple... 44 0.40
9gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, comp... 44 0.40
10ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (... 42 1.6
11ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (... 42 1.6
12gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, comple... 42 1.6
13emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in... 42 1.6
14gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosom... 42 1.6
15gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 42 1.6
16emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, c... 42 1.6
17emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chro... 42 1.6
18emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, co... 42 1.6
19gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, co... 40 6.3
20gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete... 40 6.3
21gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosom... 40 6.3
22gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.3
23gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndro... 40 6.3
24gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndro... 40 6.3
25gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.3
26gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, com... 40 6.3
27gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete ... 40 6.3
28gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, comp... 40 6.3
29emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chr... 40 6.3
30gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, co... 40 6.3
31dbj|AB193034.1| Corynebacterium glutamicum DNA, strain specific ... 40 6.3
32gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) g... 40 6.3
33gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Law... 40 6.3
34dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.3
35gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide di... 40 6.3 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  168 bits (85), Expect = 1e-38
 Identities = 187/221 (84%)
 Strand = Plus / Minus

                                                                           
Query: 235     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3343015

                                                                           
Query: 295     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
                |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 3343014 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342955

                                                                           
Query: 355     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
                ||||| | | ||||||||| |  |||||||||||  |||||||| | ||||||||||||
Sbjct: 3342954 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342895

                                                        
Query: 415     atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
               || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 3342894 atattgagaagggtcaccacggcagctttattcagaccctc 3342854



 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                           
Query: 235     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351750

                                                                           
Query: 295     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
                |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 3351749 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351690

                                                                           
Query: 355     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
                ||||||| | ||||||||| |  |||||||| ||  |||||||| | ||||||||||||
Sbjct: 3351689 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351630

                                                        
Query: 415     atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
               || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 3351629 atattgagaagggtcaccacggcagctttattcagaccctc 3351589
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  168 bits (85), Expect = 1e-38
 Identities = 187/221 (84%)
 Strand = Plus / Minus

                                                                           
Query: 235     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3342960

                                                                           
Query: 295     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
                |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 3342959 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342900

                                                                           
Query: 355     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
                ||||| | | ||||||||| |  |||||||||||  |||||||| | ||||||||||||
Sbjct: 3342899 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342840

                                                        
Query: 415     atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
               || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 3342839 atattgagaagggtcaccacggcagctttattcagaccctc 3342799



 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                           
Query: 235     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351695

                                                                           
Query: 295     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
                |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 3351694 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351635

                                                                           
Query: 355     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
                ||||||| | ||||||||| |  |||||||| ||  |||||||| | ||||||||||||
Sbjct: 3351634 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351575

                                                        
Query: 415     atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
               || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 3351574 atattgagaagggtcaccacggcagctttattcagaccctc 3351534
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>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score =  168 bits (85), Expect = 1e-38
 Identities = 187/221 (84%)
 Strand = Plus / Minus

                                                                         
Query: 235   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 22068

                                                                         
Query: 295   ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
              |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 22067 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 22008

                                                                         
Query: 355   aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
              ||||| | | ||||||||| |  |||||||||||  |||||||| | ||||||||||||
Sbjct: 22007 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 21948

                                                      
Query: 415   atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
             || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 21947 atattgagaagggtcaccacggcagctttattcagaccctc 21907



 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                         
Query: 235   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 30803

                                                                         
Query: 295   ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354
              |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 30802 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 30743

                                                                         
Query: 355   aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414
              ||||||| | ||||||||| |  |||||||| ||  |||||||| | ||||||||||||
Sbjct: 30742 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 30683

                                                      
Query: 415   atgttcaggagggtcaccaaagcagctttgttcaggccctc 455
             || || || ||||||||||  |||||||| ||||| |||||
Sbjct: 30682 atattgagaagggtcaccacggcagctttattcagaccctc 30642
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>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaacgagata 309
            |||| |||||| |||||||| |||||||||||||| ||||||||  ||||||| || | |
Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggacaca 1671

                                                      
Query: 310  aactccactccctgttcctcagccttcttcaccagcatctcc 351
            |||||| | ||||| ||||| |||||||||| ||||||||||
Sbjct: 1670 aactccgcgccctgctcctccgccttcttcatcagcatctcc 1629



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 394  gtcttcctattcatgcacttgatgttcaggagggtcaccaaagcagctttgttcaggccc 453
            |||||| |||| | ||||||||||||||| || ||||||   ||||| |||||||| |||
Sbjct: 1586 gtcttcttatttacgcacttgatgttcagtagagtcacctccgcagccttgttcagcccc 1527

              
Query: 454  tc 455
            ||
Sbjct: 1526 tc 1525
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>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 99/116 (85%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcgc 295
            ||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||| |  
Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttgacag 1520

                                                                    
Query: 296  catcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctcc 351
            | || || || | ||||||  | ||||| ||||| |||||||||||||||||||||
Sbjct: 1519 cgtcgaaggacacaaactctgcgccctgctcctccgccttcttcaccagcatctcc 1464



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 408  gcacttgatgttcaggagggtcaccaaagcagctttgttcaggccctcgcc 458
            ||||||||||||||| || ||||||   ||||| |||||||| ||||||||
Sbjct: 1410 gcacttgatgttcagtagagtcacctctgcagccttgttcagcccctcgcc 1360
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>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 250 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaa 302
           |||| ||||||||||||||| |||||||||||||| ||||||||  |||||||
Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 394 gtcttcctattcatgcacttgatgttcaggagggtcaccaaagcagctttgttcaggccc 453
           |||||| |||| | ||||||||||||||| || ||||||   ||||| |||||||| |||
Sbjct: 328 gtcttcttatttacgcacttgatgttcagtagagtcacctccgcagccttgttcagcccc 387

             
Query: 454 tc 455
           ||
Sbjct: 388 tc 389
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>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 254 agctgaagtgcttcactctgaacttccactc 284
           |||||||||||||||| ||||||||||||||
Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388
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>gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, complete sequence
          Length = 134184

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 320  cctgttcctcagccttcttcac 341
            ||||||||||||||||||||||
Sbjct: 5906 cctgttcctcagccttcttcac 5885
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>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence
          Length = 165071

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 320    cctgttcctcagccttcttcac 341
              ||||||||||||||||||||||
Sbjct: 140564 cctgttcctcagccttcttcac 140543
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>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 162 atcatccaaaagaggcagcaattacaaca 190
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
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>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 162 atcatccaaaagaggcagcaattacaaca 190
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
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>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence
          Length = 150864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    acagaaaaacatgggaaggaactca 66
             ||||||||||||| |||||||||||
Sbjct: 93457 acagaaaaacatgagaaggaactca 93481
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>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16,
             complete sequence
          Length = 145536

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    agaacaaaagcatcacaaccaatat 104
             ||||||||||||||||||| |||||
Sbjct: 40528 agaacaaaagcatcacaactaatat 40552
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>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 251    aggagctgaagtgcttcactctgaa 275
              |||||||| ||||||||||||||||
Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294
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>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 162    atcatccaaaagaggcagcaattacaaca 190
              ||||||||||||| |||| ||||||||||
Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803
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>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    agaacaaaagcatcacaaccaatat 104
             ||||||||||||||||||| |||||
Sbjct: 17970 agaacaaaagcatcacaactaatat 17994
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>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
              sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 251    aggagctgaagtgcttcactctgaa 275
              |||||||| ||||||||||||||||
Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241
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>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence
          Length = 256126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 80     agaacaaaagcatcacaaccaatat 104
              ||||||||||||||||||| |||||
Sbjct: 208905 agaacaaaagcatcacaactaatat 208929
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>gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, complete sequence
          Length = 172370

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    ctgttcctcagccttcttca 340
              ||||||||||||||||||||
Sbjct: 121775 ctgttcctcagccttcttca 121794
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>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence
          Length = 154657

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaaaagatatgtacagaaaa 49
             ||||||||||||||||||||
Sbjct: 28955 aaaaagatatgtacagaaaa 28936
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>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     tgtacagaaaaacatgggaaggaa 62
              ||||||||| ||||||||||||||
Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
              sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tactgctcgtccgtcttcct 401
              ||||||||||||||||||||
Sbjct: 466077 tactgctcgtccgtcttcct 466058
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>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
            clone MGC:80771 IMAGE:5512777), complete cds
          Length = 3361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 60   gaactcatagcagcattcagagaa 83
            ||||| ||||||||||||||||||
Sbjct: 1829 gaactaatagcagcattcagagaa 1852
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>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
          clone IMAGE:4682613), partial cds
          Length = 1593

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 60 gaactcatagcagcattcagagaa 83
          ||||| ||||||||||||||||||
Sbjct: 67 gaactaatagcagcattcagagaa 90
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tctccttgaacttgtcaaac 366
              ||||||||||||||||||||
Sbjct: 509945 tctccttgaacttgtcaaac 509926
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>gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, complete sequence
          Length = 188908

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 311    actccactccctgttcctcagccttcttcacc 342
              |||||| | |||| ||||||||||||||||||
Sbjct: 134888 actccagtacctgctcctcagccttcttcacc 134857
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>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence
          Length = 131133

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    atgaaaaaagatatgtacagaaaa 49
             ||||||||||||||||| ||||||
Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917
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>gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, complete sequence
          Length = 209259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    ctgttcctcagccttcttca 340
              ||||||||||||||||||||
Sbjct: 202087 ctgttcctcagccttcttca 202068
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>emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chromosome 6, complete
            sequence
          Length = 43345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  gcatctccttgaacttgtca 363
            ||||||||||||||||||||
Sbjct: 1794 gcatctccttgaacttgtca 1775
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>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence
          Length = 168716

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 311    actccactccctgttcctcagccttcttcacc 342
              |||||| | |||| ||||||||||||||||||
Sbjct: 168205 actccagtacctgctcctcagccttcttcacc 168236
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>dbj|AB193034.1| Corynebacterium glutamicum DNA, strain specific island 7, strain: R
          Length = 16484

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 401   tattcatgcacttgatgttcagga 424
             ||||||||||||||||||| ||||
Sbjct: 14317 tattcatgcacttgatgttgagga 14340
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>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence
          Length = 40487

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    cagcattcagagaacaaaag 89
             ||||||||||||||||||||
Sbjct: 11828 cagcattcagagaacaaaag 11809
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>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library)
            complete sequence
          Length = 16699

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 214  tcagccaggtggtcggcttc 233
            ||||||||||||||||||||
Sbjct: 8656 tcagccaggtggtcggcttc 8675
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>dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1058D3
          Length = 166683

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    attcatgcacttgatgttca 421
              ||||||||||||||||||||
Sbjct: 104715 attcatgcacttgatgttca 104734
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>gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide dismutase mRNA, partial
           cds
          Length = 606

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cagcatctccttgaacttgtcaaa 365
           |||| |||||||||||||||||||
Sbjct: 348 cagcctctccttgaacttgtcaaa 325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,417,622
Number of Sequences: 3902068
Number of extensions: 4417622
Number of successful extensions: 92535
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92387
Number of HSP's gapped (non-prelim): 148
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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