>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the
5' end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide (RIG-I), the gene for tumor protein
p53-binding protein (TP53BPL), a novel gene, a DNA
fragmentation factor, 40kDa, beta polypeptide
(caspase-activated DNase) (DFFB) (CAD, CPAN, DFF40)
pseudogene, a novel gene (FLJ25547), the NDUFB6 gene for
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6,
17kDa (B17), and a CpG island, complete sequence
Length = 155585
Score = 44.1 bits (22), Expect = 0.37
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 gatgatgtctgcacacatcagt 65
||||||||||||||||||||||
Sbjct: 34389 gatgatgtctgcacacatcagt 34368
>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the
genes for SREBF2 (sterol regulatory element binding
transcription factor 2), NAGA
(alpha-N-acetylgalactosaminidase), a gene similar to
neuronal-specific septin 3, a pseudogene similar to ANT2
(adenine nucleotide translocator 2), 2 mRNAs based on
ESTs, a genomic marker D22S1178, a CA repeat polymorpism,
ESTs and a CpG island, complete sequence
Length = 220895
Score = 40.1 bits (20), Expect = 5.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 26 cagatggcagtgcaggcaga 45
||||||||||||||||||||
Sbjct: 52763 cagatggcagtgcaggcaga 52744
>emb|AL356460.3|HS84M10 Homo sapiens chromosome 17 from PAC 84M10 map17p11.2 region
D17S842-D17S953, complete sequence
Length = 161943
Score = 40.1 bits (20), Expect = 5.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 88 ttataaaaaggttcaaggccggga 111
||||||| ||||||||||||||||
Sbjct: 105486 ttataaacaggttcaaggccggga 105463
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,027,203
Number of Sequences: 3902068
Number of extensions: 3027203
Number of successful extensions: 55538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55481
Number of HSP's gapped (non-prelim): 57
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)