ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 305 7e-80
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 305 7e-80
3gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 305 7e-80
4dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
5gb|AC090530.3| Homo sapiens chromosome 1 clone RP11-416G1, compl... 44 0.42
6emb|AL359205.15| Human DNA sequence from clone RP11-345N16 on ch... 44 0.42
7gb|AC122275.4| Mus musculus BAC clone RP23-229G17 from 15, compl... 44 0.42
8gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, comple... 42 1.7
9ref|NM_001026748.1| Caenorhabditis elegans C05C10.5b (C05C10.5) ... 42 1.7
10ref|NM_001026747.1| Caenorhabditis elegans C05C10.5a (C05C10.5) ... 42 1.7
11emb|Z48178.1|CEC05C10 Caenorhabditis elegans Cosmid C05C10, comp... 42 1.7
12gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com... 40 6.6
13gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, co... 40 6.6
14gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complet... 40 6.6
15gb|AC146279.2| Pan troglodytes BAC clone RP43-29J18 from 7, comp... 40 6.6
16gb|AC004535.1| Homo sapiens PAC clone RP4-698G21 from 7, complet... 40 6.6
17gb|AC145773.1| Pan troglodytes BAC clone RP43-32M11 from 7, comp... 40 6.6
18gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com... 40 6.6
19emb|CR848041.4| Zebrafish DNA sequence from clone DKEY-4K21 in l... 40 6.6
20gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosom... 40 6.6
21dbj|BS000206.1| Pan troglodytes chromosome 22 clone:RP43-160M11,... 40 6.6
22dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, ... 40 6.6
23emb|CR931726.9| Zebrafish DNA sequence from clone DKEYP-38E8 in ... 40 6.6
24emb|AL357095.4|CNS05TDU Human chromosome 14 DNA sequence BAC R-4... 40 6.6
25dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.6
26gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 40 6.6
27dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.6
28dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.6

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  305 bits (154), Expect = 7e-80
 Identities = 296/342 (86%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                           
Query: 135     aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
               |||||| |||||||||||||||||||| || || || || || ||||||| |||||  ||
Sbjct: 8165858 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 8165799

                                                                           
Query: 195     cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
               ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 8165798 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 8165739

                                                                           
Query: 255     tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
               ||||||   |||||||||||||||||| |||||||||||||||||||    ||| || ||
Sbjct: 8165738 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 8165679

                                                                           
Query: 312     gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
               ||| || |||||||||||||||| |||||| |   ||| ||||| ||| |||||||| ||
Sbjct: 8165678 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 8165622

                                                                           
Query: 372     catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
               |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 8165621 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 8165562

                                                         
Query: 432     tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
               |||||| || |||||||| || |  ||||||| |||||||||
Sbjct: 8165561 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 8165520



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                           
Query: 370     ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
               |||||||| |||||| |||| || |||||||| || |  |||| || |||||||||||| 
Sbjct: 8165575 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 8165516

                                                                         
Query: 430     cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
               |||||||| |  ||||| | |||||||||||||| ||||||||| ||||  |||||||
Sbjct: 8165515 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 8165458



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                           
Query: 417     gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
               ||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 8165480 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8165421

                          
Query: 477     tcccctgtccc 487
               ||  |||||||
Sbjct: 8165420 tcttctgtccc 8165410



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                           
Query: 369     gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
               ||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 8165480 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8165421

                                                         
Query: 429     tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
               ||||||||| |  || |||| | | || ||||||||||||||
Sbjct: 8165420 tcttctgtccctctgcatcaagagaggggatgccatgttcat 8165379



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 14      gattaatctgcaattagtacaaactagttgatta 47
               |||||||||||||||| ||||| ||| |||||||
Sbjct: 8165989 gattaatctgcaattactacaacctaattgatta 8165956



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  305 bits (154), Expect = 7e-80
 Identities = 296/342 (86%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                           
Query: 135     aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
               |||||| |||||||||||||||||||| || || || || || ||||||| |||||  ||
Sbjct: 8163693 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 8163634

                                                                           
Query: 195     cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
               ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 8163633 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 8163574

                                                                           
Query: 255     tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
               ||||||   |||||||||||||||||| |||||||||||||||||||    ||| || ||
Sbjct: 8163573 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 8163514

                                                                           
Query: 312     gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
               ||| || |||||||||||||||| |||||| |   ||| ||||| ||| |||||||| ||
Sbjct: 8163513 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 8163457

                                                                           
Query: 372     catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
               |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 8163456 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 8163397

                                                         
Query: 432     tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
               |||||| || |||||||| || |  ||||||| |||||||||
Sbjct: 8163396 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 8163355



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                           
Query: 370     ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
               |||||||| |||||| |||| || |||||||| || |  |||| || |||||||||||| 
Sbjct: 8163410 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 8163351

                                                                         
Query: 430     cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
               |||||||| |  ||||| | |||||||||||||| ||||||||| ||||  |||||||
Sbjct: 8163350 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 8163293



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                           
Query: 417     gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
               ||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 8163315 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8163256

                          
Query: 477     tcccctgtccc 487
               ||  |||||||
Sbjct: 8163255 tcttctgtccc 8163245



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                           
Query: 369     gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
               ||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 8163315 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8163256

                                                         
Query: 429     tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
               ||||||||| |  || |||| | | || ||||||||||||||
Sbjct: 8163255 tcttctgtccctctgcatcaagagaggggatgccatgttcat 8163214



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 14      gattaatctgcaattagtacaaactagttgatta 47
               |||||||||||||||| ||||| ||| |||||||
Sbjct: 8163824 gattaatctgcaattactacaacctaattgatta 8163791



to top

>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  305 bits (154), Expect = 7e-80
 Identities = 296/342 (86%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                         
Query: 135   aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
             |||||| |||||||||||||||||||| || || || || || ||||||| |||||  ||
Sbjct: 97288 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 97229

                                                                         
Query: 195   cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
             ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 97228 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 97169

                                                                         
Query: 255   tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
             ||||||   |||||||||||||||||| |||||||||||||||||||    ||| || ||
Sbjct: 97168 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 97109

                                                                         
Query: 312   gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
             ||| || |||||||||||||||| |||||| |   ||| ||||| ||| |||||||| ||
Sbjct: 97108 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 97052

                                                                         
Query: 372   catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
             |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 97051 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 96992

                                                       
Query: 432   tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
             |||||| || |||||||| || |  ||||||| |||||||||
Sbjct: 96991 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 96950



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                         
Query: 370   ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
             |||||||| |||||| |||| || |||||||| || |  |||| || |||||||||||| 
Sbjct: 97005 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 96946

                                                                       
Query: 430   cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
             |||||||| |  ||||| | |||||||||||||| ||||||||| ||||  |||||||
Sbjct: 96945 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 96888



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 417   gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
             ||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 96910 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 96851

                        
Query: 477   tcccctgtccc 487
             ||  |||||||
Sbjct: 96850 tcttctgtccc 96840



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                         
Query: 369   gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
             ||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 96910 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 96851

                                                       
Query: 429   tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
             ||||||||| |  || |||| | | || ||||||||||||||
Sbjct: 96850 tcttctgtccctctgcatcaagagaggggatgccatgttcat 96809



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 14    gattaatctgcaattagtacaaactagttgatta 47
             |||||||||||||||| ||||| ||| |||||||
Sbjct: 97419 gattaatctgcaattactacaacctaattgatta 97386



to top

>dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052M07, full
            insert sequence
          Length = 3187

 Score =  305 bits (154), Expect = 7e-80
 Identities = 296/342 (86%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                        
Query: 135  aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
            |||||| |||||||||||||||||||| || || || || || ||||||| |||||  ||
Sbjct: 3029 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 2970

                                                                        
Query: 195  cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
            ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2969 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 2910

                                                                        
Query: 255  tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
            ||||||   |||||||||||||||||| |||||||||||||||||||    ||| || ||
Sbjct: 2909 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 2850

                                                                        
Query: 312  gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
            ||| || |||||||||||||||| |||||| |   ||| ||||| ||| |||||||| ||
Sbjct: 2849 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 2793

                                                                        
Query: 372  catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
            |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 2792 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 2733

                                                      
Query: 432  tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
            |||||| || |||||||| || |  ||||||| |||||||||
Sbjct: 2732 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 2691



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 370  ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
            |||||||| |||||| |||| || |||||||| || |  |||| || |||||||||||| 
Sbjct: 2746 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 2687

                                                                      
Query: 430  cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
            |||||||| |  ||||| | |||||||||||||| ||||||||| ||||  |||||||
Sbjct: 2686 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 2629



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 417  gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
            ||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 2651 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 2592

                       
Query: 477  tcccctgtccc 487
            ||  |||||||
Sbjct: 2591 tcttctgtccc 2581



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 369  gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
            ||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 2651 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 2592

                                                      
Query: 429  tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
            ||||||||| |  || |||| | | || ||||||||||||||
Sbjct: 2591 tcttctgtccctctgcatcaagagaggggatgccatgttcat 2550



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 14   gattaatctgcaattagtacaaactagttgatta 47
            |||||||||||||||| ||||| ||| |||||||
Sbjct: 3160 gattaatctgcaattactacaacctaattgatta 3127



to top

>gb|AC090530.3| Homo sapiens chromosome 1 clone RP11-416G1, complete sequence
          Length = 200562

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 259    tgtgtatgcatttgcatgaaat 280
              ||||||||||||||||||||||
Sbjct: 104418 tgtgtatgcatttgcatgaaat 104397



to top

>emb|AL359205.15| Human DNA sequence from clone RP11-345N16 on chromosome 1 Contains
           a novel gene and the 3' end of a variant of novel gene
           (MGC22773), complete sequence
          Length = 169434

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 259 tgtgtatgcatttgcatgaaat 280
           ||||||||||||||||||||||
Sbjct: 181 tgtgtatgcatttgcatgaaat 160



to top

>gb|AC122275.4| Mus musculus BAC clone RP23-229G17 from 15, complete sequence
          Length = 214490

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 67    gaacatacatatcaacatacaagaag 92
             |||||||||||| |||||||||||||
Sbjct: 65889 gaacatacatatgaacatacaagaag 65914



to top

>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence
          Length = 185702

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    gaacatacatatcaacataca 87
             |||||||||||||||||||||
Sbjct: 98032 gaacatacatatcaacataca 98052



to top

>ref|NM_001026748.1| Caenorhabditis elegans C05C10.5b (C05C10.5) mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 293 ttggcaaagaactctccaggt 313
           |||||||||||||||||||||
Sbjct: 496 ttggcaaagaactctccaggt 476



to top

>ref|NM_001026747.1| Caenorhabditis elegans C05C10.5a (C05C10.5) mRNA, complete cds
          Length = 982

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 293 ttggcaaagaactctccaggt 313
           |||||||||||||||||||||
Sbjct: 536 ttggcaaagaactctccaggt 516



to top

>emb|Z48178.1|CEC05C10 Caenorhabditis elegans Cosmid C05C10, complete sequence
          Length = 26263

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   ttggcaaagaactctccaggt 313
             |||||||||||||||||||||
Sbjct: 23414 ttggcaaagaactctccaggt 23394



to top

>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence
          Length = 168316

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   taccatcatcctgagaagtg 360
             ||||||||||||||||||||
Sbjct: 27478 taccatcatcctgagaagtg 27459



to top

>gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, complete sequence
          Length = 167728

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 258   gtgtgtatgcatttgcatgaaatctgtt 285
             ||||||||||||||||||| ||| ||||
Sbjct: 71779 gtgtgtatgcatttgcatgtaatgtgtt 71752



to top

>gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complete sequence
          Length = 145844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 277    aaatctgttgcagccattggcaaa 300
              |||| |||||||||||||||||||
Sbjct: 105917 aaatgtgttgcagccattggcaaa 105894



to top

>gb|AC146279.2| Pan troglodytes BAC clone RP43-29J18 from 7, complete sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 413   tcatgttcatatcaactcttctgtctcc 440
             |||||||||||||| |||| ||||||||
Sbjct: 79791 tcatgttcatatcagctctcctgtctcc 79764



to top

>gb|AC004535.1| Homo sapiens PAC clone RP4-698G21 from 7, complete sequence
          Length = 109469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 413   tcatgttcatatcaactcttctgtctcc 440
             |||||||||||||| |||| ||||||||
Sbjct: 47170 tcatgttcatatcagctctcctgtctcc 47143



to top

>gb|AC145773.1| Pan troglodytes BAC clone RP43-32M11 from 7, complete sequence
          Length = 190630

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 277   aaatctgttgcagccattggcaaa 300
             |||| |||||||||||||||||||
Sbjct: 18613 aaatgtgttgcagccattggcaaa 18590



to top

>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence
          Length = 167209

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    taccatcatcctgagaagtg 360
              ||||||||||||||||||||
Sbjct: 113856 taccatcatcctgagaagtg 113875



to top

>emb|CR848041.4| Zebrafish DNA sequence from clone DKEY-4K21 in linkage group 21,
             complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   tgatgccatgttcatatcga 475
             ||||||||||||||||||||
Sbjct: 94788 tgatgccatgttcatatcga 94769



to top

>gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosome 16, complete
             sequence
          Length = 143881

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 65    aagaacatacatatcaacatacaagaag 92
             ||||| ||||||||||| ||||||||||
Sbjct: 28128 aagaagatacatatcaatatacaagaag 28155



to top

>dbj|BS000206.1| Pan troglodytes chromosome 22 clone:RP43-160M11, map 22, complete
              sequences
          Length = 181571

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ctaaacaaatgttacagtag 125
              ||||||||||||||||||||
Sbjct: 108458 ctaaacaaatgttacagtag 108477



to top

>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete
              sequences
          Length = 184428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    catttgcatgaaatctgttg 286
              ||||||||||||||||||||
Sbjct: 155921 catttgcatgaaatctgttg 155940



to top

>emb|CR931726.9| Zebrafish DNA sequence from clone DKEYP-38E8 in linkage group 11,
             complete sequence
          Length = 131097

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aacatacatatcaacataca 87
             ||||||||||||||||||||
Sbjct: 53307 aacatacatatcaacataca 53288



to top

>emb|AL357095.4|CNS05TDU Human chromosome 14 DNA sequence BAC R-48D2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181805

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    gtgtgcataccatcatcctgagaa 357
              ||||||||||||||| ||||||||
Sbjct: 137073 gtgtgcataccatcagcctgagaa 137096



to top

>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    catttgcatgaaatctgttg 286
              ||||||||||||||||||||
Sbjct: 318281 catttgcatgaaatctgttg 318300



to top

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     tgaggagttgtttgggatgg 246
               ||||||||||||||||||||
Sbjct: 1256414 tgaggagttgtttgggatgg 1256433



to top

>dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:P289H18, complete sequence
          Length = 146847

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   catttgcatgaaatctgttg 286
             ||||||||||||||||||||
Sbjct: 61365 catttgcatgaaatctgttg 61384



to top

>dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 7/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   catttgcatgaaatctgttg 286
             ||||||||||||||||||||
Sbjct: 92269 catttgcatgaaatctgttg 92288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,461,984
Number of Sequences: 3902068
Number of extensions: 4461984
Number of successful extensions: 85454
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85305
Number of HSP's gapped (non-prelim): 137
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top