No.
Definition
Score (bits)
E Value
1 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
305
7e-80
2 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
305
7e-80
3 gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome...
305
7e-80
4 dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clon...
305
7e-80
5 gb|AC090530.3| Homo sapiens chromosome 1 clone RP11-416G1, compl...
44
0.42
6 emb|AL359205.15| Human DNA sequence from clone RP11-345N16 on ch...
44
0.42
7 gb|AC122275.4| Mus musculus BAC clone RP23-229G17 from 15, compl...
44
0.42
8 gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, comple...
42
1.7
9 ref|NM_001026748.1| Caenorhabditis elegans C05C10.5b (C05C10.5) ...
42
1.7
10 ref|NM_001026747.1| Caenorhabditis elegans C05C10.5a (C05C10.5) ...
42
1.7
11 emb|Z48178.1|CEC05C10 Caenorhabditis elegans Cosmid C05C10, comp...
42
1.7
12 gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com...
40
6.6
13 gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, co...
40
6.6
14 gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complet...
40
6.6
15 gb|AC146279.2| Pan troglodytes BAC clone RP43-29J18 from 7, comp...
40
6.6
16 gb|AC004535.1| Homo sapiens PAC clone RP4-698G21 from 7, complet...
40
6.6
17 gb|AC145773.1| Pan troglodytes BAC clone RP43-32M11 from 7, comp...
40
6.6
18 gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com...
40
6.6
19 emb|CR848041.4| Zebrafish DNA sequence from clone DKEY-4K21 in l...
40
6.6
20 gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosom...
40
6.6
21 dbj|BS000206.1| Pan troglodytes chromosome 22 clone:RP43-160M11,...
40
6.6
22 dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, ...
40
6.6
23 emb|CR931726.9| Zebrafish DNA sequence from clone DKEYP-38E8 in ...
40
6.6
24 emb|AL357095.4|CNS05TDU Human chromosome 14 DNA sequence BAC R-4...
40
6.6
25 dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
6.6
26 gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...
40
6.6
27 dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
6.6
28 dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
6.6
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 305 bits (154), Expect = 7e-80
Identities = 296/342 (86%), Gaps = 6/342 (1%)
Strand = Plus / Minus
Query: 135 aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
|||||| |||||||||||||||||||| || || || || || ||||||| ||||| ||
Sbjct: 8165858 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 8165799
Query: 195 cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 8165798 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 8165739
Query: 255 tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
|||||| |||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 8165738 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 8165679
Query: 312 gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
||| || |||||||||||||||| |||||| | ||| ||||| ||| |||||||| ||
Sbjct: 8165678 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 8165622
Query: 372 catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
|||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 8165621 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 8165562
Query: 432 tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
|||||| || |||||||| || | ||||||| |||||||||
Sbjct: 8165561 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 8165520
Score = 75.8 bits (38), Expect = 1e-10
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 370 ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
|||||||| |||||| |||| || |||||||| || | |||| || ||||||||||||
Sbjct: 8165575 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 8165516
Query: 430 cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
|||||||| | ||||| | |||||||||||||| ||||||||| |||| |||||||
Sbjct: 8165515 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 8165458
Score = 69.9 bits (35), Expect = 7e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 417 gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 8165480 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8165421
Query: 477 tcccctgtccc 487
|| |||||||
Sbjct: 8165420 tcttctgtccc 8165410
Score = 67.9 bits (34), Expect = 3e-08
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 369 gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 8165480 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8165421
Query: 429 tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
||||||||| | || |||| | | || ||||||||||||||
Sbjct: 8165420 tcttctgtccctctgcatcaagagaggggatgccatgttcat 8165379
Score = 44.1 bits (22), Expect = 0.42
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 14 gattaatctgcaattagtacaaactagttgatta 47
|||||||||||||||| ||||| ||| |||||||
Sbjct: 8165989 gattaatctgcaattactacaacctaattgatta 8165956
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 305 bits (154), Expect = 7e-80
Identities = 296/342 (86%), Gaps = 6/342 (1%)
Strand = Plus / Minus
Query: 135 aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
|||||| |||||||||||||||||||| || || || || || ||||||| ||||| ||
Sbjct: 8163693 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 8163634
Query: 195 cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 8163633 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 8163574
Query: 255 tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
|||||| |||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 8163573 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 8163514
Query: 312 gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
||| || |||||||||||||||| |||||| | ||| ||||| ||| |||||||| ||
Sbjct: 8163513 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 8163457
Query: 372 catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
|||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 8163456 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 8163397
Query: 432 tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
|||||| || |||||||| || | ||||||| |||||||||
Sbjct: 8163396 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 8163355
Score = 75.8 bits (38), Expect = 1e-10
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 370 ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
|||||||| |||||| |||| || |||||||| || | |||| || ||||||||||||
Sbjct: 8163410 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 8163351
Query: 430 cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
|||||||| | ||||| | |||||||||||||| ||||||||| |||| |||||||
Sbjct: 8163350 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 8163293
Score = 69.9 bits (35), Expect = 7e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 417 gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 8163315 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8163256
Query: 477 tcccctgtccc 487
|| |||||||
Sbjct: 8163255 tcttctgtccc 8163245
Score = 67.9 bits (34), Expect = 3e-08
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 369 gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 8163315 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 8163256
Query: 429 tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
||||||||| | || |||| | | || ||||||||||||||
Sbjct: 8163255 tcttctgtccctctgcatcaagagaggggatgccatgttcat 8163214
Score = 44.1 bits (22), Expect = 0.42
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 14 gattaatctgcaattagtacaaactagttgatta 47
|||||||||||||||| ||||| ||| |||||||
Sbjct: 8163824 gattaatctgcaattactacaacctaattgatta 8163791
>gb|AC134234.3 | Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0019J12, complete sequence
Length = 195583
Score = 305 bits (154), Expect = 7e-80
Identities = 296/342 (86%), Gaps = 6/342 (1%)
Strand = Plus / Minus
Query: 135 aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
|||||| |||||||||||||||||||| || || || || || ||||||| ||||| ||
Sbjct: 97288 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 97229
Query: 195 cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 97228 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 97169
Query: 255 tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
|||||| |||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 97168 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 97109
Query: 312 gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
||| || |||||||||||||||| |||||| | ||| ||||| ||| |||||||| ||
Sbjct: 97108 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 97052
Query: 372 catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
|||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 97051 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 96992
Query: 432 tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
|||||| || |||||||| || | ||||||| |||||||||
Sbjct: 96991 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 96950
Score = 75.8 bits (38), Expect = 1e-10
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 370 ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
|||||||| |||||| |||| || |||||||| || | |||| || ||||||||||||
Sbjct: 97005 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 96946
Query: 430 cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
|||||||| | ||||| | |||||||||||||| ||||||||| |||| |||||||
Sbjct: 96945 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 96888
Score = 69.9 bits (35), Expect = 7e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 417 gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 96910 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 96851
Query: 477 tcccctgtccc 487
|| |||||||
Sbjct: 96850 tcttctgtccc 96840
Score = 67.9 bits (34), Expect = 3e-08
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 369 gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 96910 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 96851
Query: 429 tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
||||||||| | || |||| | | || ||||||||||||||
Sbjct: 96850 tcttctgtccctctgcatcaagagaggggatgccatgttcat 96809
Score = 44.1 bits (22), Expect = 0.42
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 14 gattaatctgcaattagtacaaactagttgatta 47
|||||||||||||||| ||||| ||| |||||||
Sbjct: 97419 gattaatctgcaattactacaacctaattgatta 97386
>dbj|AK101625.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033052M07, full
insert sequence
Length = 3187
Score = 305 bits (154), Expect = 7e-80
Identities = 296/342 (86%), Gaps = 6/342 (1%)
Strand = Plus / Minus
Query: 135 aaactaccccacatgcattccacctccgatgaaatacgtattggtttccacattggatct 194
|||||| |||||||||||||||||||| || || || || || ||||||| ||||| ||
Sbjct: 3029 aaactatcccacatgcattccacctcccataaagtatgtgtttgtttccatattgggcct 2970
Query: 195 cttgtttgagtccatcacctgatctctcatattgaggagttgtttgggatggtaaactgg 254
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2969 cttatttgtgtccatcacctgatctctcatattgaggagttgttttggatggtaaacggg 2910
Query: 255 tgggtgtgtatgcatttgcatgaaatctgttgcagccattggcaaag---aactctccag 311
|||||| |||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 2909 tgggtgctgatgcatttgcatgaaatcagttgcagccattggcaaaggaccactttctag 2850
Query: 312 gttgacgttcaccaaatcaaaagtgtgcataccatcatcctgagaagtggataccatgtt 371
||| || |||||||||||||||| |||||| | ||| ||||| ||| |||||||| ||
Sbjct: 2849 gttcacattcaccaaatcaaaagagtgcattc---cattctgagcagtagataccatatt 2793
Query: 372 catatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaactct 431
|||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 2792 catatccactctggtgtcaccttgtatcaagtgaggggatgtcatattcatatcaactct 2733
Query: 432 tctgtctccgtgtatcaggtgtggtgatgccatgttcatatc 473
|||||| || |||||||| || | ||||||| |||||||||
Sbjct: 2732 tctgtccccttgtatcagatgcgaagatgccaggttcatatc 2691
Score = 75.8 bits (38), Expect = 1e-10
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 370 ttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaact 429
|||||||| |||||| |||| || |||||||| || | |||| || ||||||||||||
Sbjct: 2746 ttcatatcaactcttctgtccccttgtatcagatgcgaagatgccaggttcatatcaacc 2687
Query: 430 cttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgactcccctgtccc 487
|||||||| | ||||| | |||||||||||||| ||||||||| |||| |||||||
Sbjct: 2686 cttctgtcgctttgtataaagtgtggtgatgccaagttcatatcaactcttctgtccc 2629
Score = 69.9 bits (35), Expect = 7e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 417 gttcatatcaactcttctgtctccgtgtatcaggtgtggtgatgccatgttcatatcgac 476
||||||||||||||||||||| || ||||||| |||||| || ||||||||||| || ||
Sbjct: 2651 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 2592
Query: 477 tcccctgtccc 487
|| |||||||
Sbjct: 2591 tcttctgtccc 2581
Score = 67.9 bits (34), Expect = 3e-08
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 369 gttcatatccactcttgtgtcaccgtgtatcaggtgaggggatgtcatgttcatatcaac 428
||||||||| |||||| |||| || ||||||| ||| ||||| | ||||||||| |||||
Sbjct: 2651 gttcatatcaactcttctgtccccctgtatcatgtgtggggaggccatgttcatgtcaac 2592
Query: 429 tcttctgtctccgtgtatcaggtgtggtgatgccatgttcat 470
||||||||| | || |||| | | || ||||||||||||||
Sbjct: 2591 tcttctgtccctctgcatcaagagaggggatgccatgttcat 2550
Score = 44.1 bits (22), Expect = 0.42
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 14 gattaatctgcaattagtacaaactagttgatta 47
|||||||||||||||| ||||| ||| |||||||
Sbjct: 3160 gattaatctgcaattactacaacctaattgatta 3127
>dbj|AP000209.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
f43D11-119B8, segment 7/12, complete sequence
Length = 100000
Score = 40.1 bits (20), Expect = 6.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 267 catttgcatgaaatctgttg 286
||||||||||||||||||||
Sbjct: 92269 catttgcatgaaatctgttg 92288
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,461,984
Number of Sequences: 3902068
Number of extensions: 4461984
Number of successful extensions: 85454
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85305
Number of HSP's gapped (non-prelim): 137
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)