>CN054_MACFA (Q95K27) Protein C14orf54 homolog (Fragment)|
          Length = 346

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 82  REGNRHTTISSWNATIPLQREGNRH--TTISSC*TE*CXXXXMQQRWAAILTPKFRRTPK 255
           +E ++H TIS+    I L  EG R+  TT++   +E      M+ + +   TP F+ T  
Sbjct: 249 KESSKHVTISN----ITLTFEGKRYFQTTLTPVESEANTSKEMENKTSEEKTPDFQSTAL 304

Query: 256 GSKQARSVR 282
            ++++RS+R
Sbjct: 305 EAEESRSLR 313

>POLG_EBHSG (Q96725) Genome polyprotein [Contains: p16; p23; Helicase (2C-like|
           protein) (P2C); 3A-like protein; Viral genome-linked
           protein (VPg); Thiol protease P3C (EC 3.4.22.-);
           RNA-directed RNA polymerase (EC 2.7.7.48); Capsid
           protein VP60, subgenomic
          Length = 2334

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 27/94 (28%)
 Frame = -2

Query: 395 RCSDPL------VVLALHNCYLSETGDMLSLMDPTDLLYDIVSCLTDRACLLPFGVR--- 243
           + SDPL      +++ALHNC   +T  MLS   P +LL  ++    D    L   +R   
Sbjct: 261 KLSDPLKTLAAILLVALHNCVAVDTTTMLSHFKPVNLLAILLDWTNDLPGFLTTLIRFME 320

Query: 242 --------LNLGVN----------IAAQRCCMLL 195
                   +NL V+           A +RCC LL
Sbjct: 321 LYGVVQSTVNLVVDAIKSFWDRVMCATERCCDLL 354

>MAD_DROME (P42003) Protein mothers against dpp|
          Length = 455

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 98  IQPFHLGMQPFHYKEKEIGIQPFHLAKLSSVII 196
           ++P  L   PF  K+KE+ I P+H  ++ S ++
Sbjct: 117 LKPLELCQYPFSAKQKEVCINPYHYKRVESPVL 149

>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)|
          Length = 1011

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 401 SGRCSDPLVVLALHNCYLSETGDMLSLMDPTD--LLYDIVSCLTDRACLLP 255
           S RC +P+V   + +C  S  G++   M P D  L +D + CL +   LLP
Sbjct: 353 SARCLEPMVACWVSSCPGSAEGNLQKFM-PLDQWLYFDALDCLPEDGELLP 402

>DRS1_YARLI (Q6CEB8) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 753

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 204 ATTLGGNINT*IQ---ANPKR*QTGSVSQAANYIIQEVCRIHKREHVTCFRQVTIVQSKD 374
           + T+  +I++ IQ   + P R       QAA+ ++QE  RI KR+H+      +I++  D
Sbjct: 437 SATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASILKKMD 496

>RPOL_KLULA (P05472) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (Killer|
           plasmid PGKL2 protein 6)
          Length = 982

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 274 SVRQLTISYKRSVGSIRESMSPVSDK*QLCKARTTSGSL 390
           S+R++TI   RS   ++E     +DK ++C  +T+ GSL
Sbjct: 244 SIRRITIPSSRSNAPMKERRVEDNDKYKICPIQTSDGSL 282

>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC|
           2.7.11.1)
          Length = 620

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 158 VCLFPSLCNGMVAFQDEMVVCLFPSLCNGIYS 63
           V L+  LC G + F DE +  LF  + NG+Y+
Sbjct: 239 VILYVMLC-GRLPFDDEFIPALFKKISNGVYT 269

>SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinase (EC|
           2.7.11.1)
          Length = 619

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 158 VCLFPSLCNGMVAFQDEMVVCLFPSLCNGIYS 63
           V L+  LC G + F DE +  LF  + NG+Y+
Sbjct: 237 VILYVMLC-GRLPFDDEFIPALFKKISNGVYT 267

>A2MG_MOUSE (Q61838) Alpha-2-macroglobulin precursor (Alpha-2-M) [Contains:|
            Alpha-2-macroglobulin 165 kDa subunit;
            Alpha-2-macroglobulin 35 kDa subunit]
          Length = 1495

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 131  GMVAFQDEMVVCLFPSLCNGIYSRTEHKDWNNRLLLQNISTP 6
            G   F       L  S  +G +S+T H +  NRLLLQ +  P
Sbjct: 1283 GSATFTRSQKEVLVTSRSSGTFSKTFHVNSGNRLLLQEVRLP 1324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,579,007
Number of Sequences: 219361
Number of extensions: 1444939
Number of successful extensions: 3065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)