ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YNA8_YEAST (P53983) Hypothetical 76.7 kDa protein in SPO1-SIS1 i... 29 3.5
2MMHB_AGKHA (Q9YI92) Mamushigin beta chain precursor 29 3.5
3ZAN_MOUSE (O88799) Zonadhesin precursor 28 4.6
4DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Digl... 28 4.6
5TBX11_CAEEL (Q20257) Putative T-box protein 11 28 6.0
6APEB_PSEPK (Q88M44) Probable M18-family aminopeptidase 2 (EC 3.4... 28 7.8

>YNA8_YEAST (P53983) Hypothetical 76.7 kDa protein in SPO1-SIS1 intergenic|
           region
          Length = 669

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 6   CTVRSRNVKTIN*PCPVSCTDCRKKKSYKG 95
           C V  RN+ T    C   C DCR    YKG
Sbjct: 620 CKVNKRNIVTWPCRCLALCDDCRISLGYKG 649



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>MMHB_AGKHA (Q9YI92) Mamushigin beta chain precursor|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -1

Query: 212 SECLVLPTDDDNLHRNLWIT--HCVAYRE------STGCSRCVVELCAF 90
           +EC+V  TD   L  N WIT   C+A +       S  CSR    +C F
Sbjct: 96  NECMVEWTDGTRLSHNAWITESECIAAKTTDNQWLSRPCSRTYNVVCKF 144



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>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -3

Query: 261  TSLQSPSWLFCS---PVKPL*MSCL 196
            T+LQ P+W  CS   P+KP  + C+
Sbjct: 2272 TALQGPAWAHCSSRVPIKPFLLKCM 2296



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>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase|
           1) (DGK 1) (DAG kinase 1)
          Length = 1020

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 67  TVEKKNLTKAHNSTTHREQPVLSLYATQCVIHRLRCRLSSSVGKT 201
           T+E  + T   N TT  +   +S + TQC+   LR  +SSS   T
Sbjct: 566 TMEFGSSTTTTNRTTTTKSISMSTFETQCLQQTLRTAMSSSSSNT 610



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>TBX11_CAEEL (Q20257) Putative T-box protein 11|
          Length = 322

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 25  MSKLSIDPV-LSHVQTVEKKNLTKAHNSTTHREQPVLSLYATQCVIHRLRCRLSSSVGKT 201
           +  +S D + +++ ++ E  N +  H  T HR  PVL++Y    ++H  R   S  +  T
Sbjct: 103 LRNVSFDQIRITNRKSKEDGNASYVHLLTQHRYIPVLTIYEGDQLVHTARIPHSQFISVT 162

Query: 202 RH 207
            +
Sbjct: 163 AY 164



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>APEB_PSEPK (Q88M44) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)|
          Length = 429

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 262 DFSSESKLVILLSCKTSLNVLSCQRMMITCTVICGSH 152
           DF + ++L  LLSC   L  L       TC ++C  H
Sbjct: 228 DFIAGARLDNLLSCYAGLQALLAADSDETCVLVCNDH 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,469,526
Number of Sequences: 219361
Number of extensions: 837548
Number of successful extensions: 2156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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