ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29a06 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 320 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 320 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 320 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)| (K6c keratin) Length = 563 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 395 DHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6B_HUMAN (P04259) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)| (K6b keratin) Length = 563 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 395 DHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) Length = 563 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 395 DHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 320 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 856 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900
>K2C6B_MOUSE (Q9Z331) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)| (K6b keratin) (Keratin-6 beta) (mK6-beta) Length = 561 Score = 32.7 bits (73), Expect = 0.54 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ + LE LE +KAK+E RL Sbjct: 392 DHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQEMARL 440
>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)| (K6e keratin) (Keratin K6h) Length = 563 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + +A E+ K+ K LE LE +KAK++ RL Sbjct: 395 DHVKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)| (K6d keratin) (Fragment) Length = 384 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + +A E+ K+ K LE LE +KAK++ RL Sbjct: 216 DHVKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 264
>K2C6A_MOUSE (P50446) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) (Keratin-6 alpha) (mK6-alpha) Length = 552 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ + LE LE +KAK++ RL Sbjct: 384 DHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQDMARL 432
>K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 576 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 397 DNVKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 445
>K2C5_MOUSE (Q922U2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 580 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 395 DNVKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 443
>K2C5_HUMAN (P13647) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) (58 kDa cytokeratin) Length = 590 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 401 DNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 449
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 259 CLLSSTDAAGVSSRLELALPRRIQ 330 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 320 EE R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + + Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174
>K2C5_BOVIN (Q5XQN5) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 601 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + + +A E+ K+ ++ L LE +KAK++ RL Sbjct: 402 DNVKKQCANLQNAIADAEQRGELALKDARSKLAELEDALQKAKQDMARL 450
>K2C4_BOVIN (P04260) Keratin, type II cytoskeletal 59 kDa, component IV| (Keratin K6 gamma) (Fragment) Length = 182 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 493 DRIQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 347 D ++ QC + +A E+ K+ ++ L +LE +KAK++ RL Sbjct: 7 DHVKKQCASLQSAIADAEQRGELALKDARSKLADLEDALQKAKQDMARL 55
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 320 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 320 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 320 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 320 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 284 AASVDERRQWHAQPWFRYESFGHRAKLSRELI*KLSKKERLY 159 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = -2 Query: 463 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 326 +E ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 429 KEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)| Length = 715 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = -2 Query: 487 IQHQCCHAEEGLAR---LERGKRWDTKERKTALENLEQFQEKAK 365 + +C + G A+ + +GK + +ERKTA++ E+F +K K Sbjct: 278 LSEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMK 321
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 427 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 320 WD K KT L + EK KKER+ + D++ D Sbjct: 5 WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,008,131 Number of Sequences: 219361 Number of extensions: 1067061 Number of successful extensions: 3588 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3468 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3584 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
