ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29a05 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -1 Query: 475 RFGPTIEQHVDPANKNALLQLCAAYNANI 389 R+ I ++++ AN+ AL+QLC AYN I Sbjct: 943 RYPQIIGENLEQANQTALIQLCNAYNCGI 971
>NU1M_PECMA (Q96186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 354 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = -2 Query: 423 FFSFVLPIMPTLSRSQMPSFQGICLVSRVFCQRMMSLLVSC 301 FFSF++ + L RS P ++ L+ ++CQ ++ +L+SC Sbjct: 307 FFSFMVVFLIVLCRSSFPRYRYDMLMKLIWCQ-ILPILMSC 346
>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A| precursor Length = 928 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 278 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGSTKL 418 N A+WT+DT KT+ET ND +W G+I S +L Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHSIQL 417
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 65 AVIRHGKWYICWMLLATSTVG 3 AV+ G W +CWM+LA+S G Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 266 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 370 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Frame = +1 Query: 40 YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLL 219 Y F C +S G N H V HS+ K L + H + +DRY + LL Sbjct: 59 YQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILVNFHWQVSEILDRYKSNSAQLL 117 Query: 220 YDLIWRP------PSSHP 255 + +P P+SHP Sbjct: 118 VEARVQPNPSKHVPTSHP 135
>BPAEB_MOUSE (Q60824) Bullous pemphigoid antigen 1, isoforms 6/7 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragments) Length = 1678 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 900 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 951
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 1833 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 1884
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3 Query: 197 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 51 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>CI094_HUMAN (Q496M8) Protein C9orf94 precursor| Length = 467 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 388 QCWHYRQHKAEEERFCLLGPHAAQW 462 +C H R +KA E C GP A W Sbjct: 398 ECVHARTNKAVPEHLCSWGPRPANW 422
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 180 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 67 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,946,151 Number of Sequences: 219361 Number of extensions: 1755783 Number of successful extensions: 4775 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4772 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
