ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
2dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
3dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 76 1e-10
8gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, co... 44 0.41
9ref|XM_473065.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
10emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on ch... 42 1.6
11gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell ... 42 1.6
12gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell... 42 1.6
13gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell... 42 1.6
14gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 42 1.6
15gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 42 1.6
16dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
17gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 ... 42 1.6
18ref|NM_001030824.1| Gallus gallus WW domain binding protein 4 (f... 40 6.4
19ref|XM_799460.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
20ref|XM_799655.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
21ref|XM_800110.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
22ref|XM_808492.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
23gb|AC111188.8| Homo sapiens chromosome 11, clone RP11-179A10, co... 40 6.4
24gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete... 40 6.4
25ref|XM_799176.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
26ref|XM_800625.1| Trypanosoma cruzi strain CL Brener trans-sialid... 40 6.4
27gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, comple... 40 6.4
28ref|XM_847720.1| PREDICTED: Canis familiaris similar to centrome... 40 6.4
29emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 40 6.4
30emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr... 40 6.4
31emb|AJ851443.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.4
32gb|AC025089.9| Homo sapiens chromosome 8, clone RP11-275B19, com... 40 6.4
33gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, compl... 40 6.4
34gb|AC100799.2| Homo sapiens chromosome 8, clone RP11-1082F24, co... 40 6.4
35ref|XM_695439.1| PREDICTED: Danio rerio similar to thioredoxin-r... 40 6.4
36ref|XM_695402.1| PREDICTED: Danio rerio similar to thioredoxin-r... 40 6.4
37gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, com... 40 6.4
38gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, com... 40 6.4
39gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 40 6.4
40emb|BX511158.5| Zebrafish DNA sequence from clone DKEY-28B4 in l... 40 6.4
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
42gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete s... 40 6.4
43ref|NM_001002113.1| Danio rerio zgc:86830 (zgc:86830), mRNA 40 6.4
44emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chro... 40 6.4
45dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, ... 40 6.4
48gb|BC071481.1| Danio rerio zgc:86830, mRNA (cDNA clone MGC:86830... 40 6.4
49gb|AE001439.1| Helicobacter pylori J99, complete genome 40 6.4
50emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ... 40 6.4
51gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, compl... 40 6.4
52emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 ... 40 6.4
53emb|AL132666.8|CNS01DT8 Human chromosome 14 DNA sequence BAC R-1... 40 6.4
54gb|M62736.1|TRBSIALB T.cruzi sialidase (SA85-1.2) mRNA, 3' end 40 6.4 
>dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042B20, full
            insert sequence
          Length = 3625

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030

                                                 
Query: 436  ttgctgggtccacatgctgctcaatggtaggaccaaa 472
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 3029 ttgcaggatccacgttctgctcaatgataggaccaaa 2993
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>dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-B02, full
            insert sequence
          Length = 2173

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 1637 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 1578

                                                 
Query: 436  ttgctgggtccacatgctgctcaatggtaggaccaaa 472
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 1577 ttgcaggatccacgttctgctcaatgataggaccaaa 1541
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>dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114P05, full
            insert sequence
          Length = 3625

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030

                                                 
Query: 436  ttgctgggtccacatgctgctcaatggtaggaccaaa 472
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 3029 ttgcaggatccacgttctgctcaatgataggaccaaa 2993
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                           
Query: 382     cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 441
               ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 7478736 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 7478795

                                              
Query: 442     ggtccacatgctgctcaatggtaggaccaaa 472
               | ||||| | |||||||||| ||||||||||
Sbjct: 7478796 gatccacgttctgctcaatgataggaccaaa 7478826
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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0702F03
          Length = 141111

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                          
Query: 382    cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 441
              ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 139764 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 139823

                                             
Query: 442    ggtccacatgctgctcaatggtaggaccaaa 472
              | ||||| | |||||||||| ||||||||||
Sbjct: 139824 gatccacgttctgctcaatgataggaccaaa 139854
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 382   cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 441
             ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 27528 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 27587

                                            
Query: 442   ggtccacatgctgctcaatggtaggaccaaa 472
             | ||||| | |||||||||| ||||||||||
Sbjct: 27588 gatccacgttctgctcaatgataggaccaaa 27618
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>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctgg 442
            |||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| ||
Sbjct: 2952 ctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcagg 2893

                                          
Query: 443  gtccacatgctgctcaatggtaggaccaaa 472
             ||||| | |||||||||| ||||||||||
Sbjct: 2892 atccacgttctgctcaatgataggaccaaa 2863
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>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence
          Length = 149787

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 333   aaaaaaccctggaaaccaagcaaatg 358
             |||||||||||||||| |||||||||
Sbjct: 69735 aaaaaaccctggaaacaaagcaaatg 69760
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>ref|XM_473065.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 actcatcatcctctgacaaaa 336
           |||||||||||||||||||||
Sbjct: 561 actcatcatcctctgacaaaa 541
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>emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on chromosome X Contains the
             3' end of a novel gene similar to Chic1 (LOC349423)and a
             selenophosphate synthetase (SPS) pseudogene, complete
             sequence
          Length = 180619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   acatggatgaaccagaaacca 289
             |||||||||||||||||||||
Sbjct: 44477 acatggatgaaccagaaacca 44457
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>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165928

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 109827 cacacgcacacaaaattccaa 109847
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>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172784

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 144837 cacacgcacacaaaattccaa 144857
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>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 159030 cacacgcacacaaaattccaa 159010
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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 243   ttcttcccatcccaccatcagccta 267
             ||||||||||||||||||| |||||
Sbjct: 79289 ttcttcccatcccaccatctgccta 79313
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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cacacagacaatgttgacaac 109
              |||||||||||||||||||||
Sbjct: 137629 cacacagacaatgttgacaac 137609
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>dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G19, full
           insert sequence
          Length = 2585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 actcatcatcctctgacaaaa 336
           |||||||||||||||||||||
Sbjct: 655 actcatcatcctctgacaaaa 635
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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 319584 cacacgcacacaaaattccaa 319564
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>ref|NM_001030824.1| Gallus gallus WW domain binding protein 4 (formin binding protein 21)
            (WBP4), mRNA
          Length = 4867

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 418  gaagaagagcgtttttgttt 437
            ||||||||||||||||||||
Sbjct: 4091 gaagaagagcgtttttgttt 4110
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>ref|XM_799460.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053504183.20) partial mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1360 tggcgacctccttcttccca 1341
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>ref|XM_799655.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053509411.10) partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1357 tggcgacctccttcttccca 1338
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>ref|XM_800110.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053508563.20) partial mRNA
          Length = 2535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1351 tggcgacctccttcttccca 1332
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>ref|XM_808492.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053509265.90) partial mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1297 tggcgacctccttcttccca 1278
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>gb|AC111188.8| Homo sapiens chromosome 11, clone RP11-179A10, complete sequence
          Length = 146308

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   ctccttcttcccatcccacc 258
             ||||||||||||||||||||
Sbjct: 87169 ctccttcttcccatcccacc 87150
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>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence
          Length = 138404

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   agacagatactccacaaagt 205
             ||||||||||||||||||||
Sbjct: 98671 agacagatactccacaaagt 98652
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>ref|XM_799176.1| Trypanosoma cruzi strain CL Brener trans-sialidase
           (Tc00.1047053504491.20) partial mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 tggcgacctccttcttccca 251
           ||||||||||||||||||||
Sbjct: 397 tggcgacctccttcttccca 378
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>ref|XM_800625.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053511413.19) partial mRNA
          Length = 1447

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1363 tggcgacctccttcttccca 1344
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>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence
          Length = 190505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             |||||||||||| |||||||||||
Sbjct: 28219 cacacaaaattcaaaaccaaaata 28242
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>ref|XM_847720.1| PREDICTED: Canis familiaris similar to centromere protein F
            (350/400kD) (LOC610263), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  agaaaccagcttcatggaca 301
            ||||||||||||||||||||
Sbjct: 2326 agaaaccagcttcatggaca 2345
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>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 333   aaaaaaccctggaaaccaagcaaatgcc 360
             ||||| |||||||||||||||| |||||
Sbjct: 15400 aaaaatccctggaaaccaagcagatgcc 15373
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>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the
             5' end of a novel gene, two novel genes, the Taok1 gene
             for TAO kinase 1, a eukaryotic translation initiation
             factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal
             protein S2 (Rps2) pseudogene, the Cryba1 gene for
             crystallin beta A1 and two CpG islands, complete sequence
          Length = 220230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ataacaacacacacagacaa 99
             ||||||||||||||||||||
Sbjct: 65918 ataacaacacacacagacaa 65937
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>emb|AJ851443.1| Gallus gallus mRNA for hypothetical protein, clone 3a20
          Length = 4867

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 418  gaagaagagcgtttttgttt 437
            ||||||||||||||||||||
Sbjct: 4091 gaagaagagcgtttttgttt 4110
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>gb|AC025089.9| Homo sapiens chromosome 8, clone RP11-275B19, complete sequence
          Length = 165870

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tccttcttcccatcccacca 259
              ||||||||||||||||||||
Sbjct: 127877 tccttcttcccatcccacca 127858
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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ctgctatatgatttgatttg 233
              ||||||||||||||||||||
Sbjct: 187456 ctgctatatgatttgatttg 187437
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>gb|AC100799.2| Homo sapiens chromosome 8, clone RP11-1082F24, complete sequence
          Length = 194149

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   tccttcttcccatcccacca 259
             ||||||||||||||||||||
Sbjct: 17169 tccttcttcccatcccacca 17150
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>ref|XM_695439.1| PREDICTED: Danio rerio similar to thioredoxin-related transmembrane
           protein 2 (LOC571810), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ccacatgctgctcaatggta 464
           ||||||||||||||||||||
Sbjct: 372 ccacatgctgctcaatggta 353
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>ref|XM_695402.1| PREDICTED: Danio rerio similar to thioredoxin-related transmembrane
           protein 2 (LOC571776), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ccacatgctgctcaatggta 464
           ||||||||||||||||||||
Sbjct: 372 ccacatgctgctcaatggta 353
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>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence
          Length = 165566

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    acaaaaaaccctggaaacca 350
              ||||||||||||||||||||
Sbjct: 115422 acaaaaaaccctggaaacca 115441
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>gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, complete sequence
          Length = 200418

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   acaaaaaaccctggaaacca 350
             ||||||||||||||||||||
Sbjct: 22691 acaaaaaaccctggaaacca 22710
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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    cagcttcatggacacatgac 307
              ||||||||||||||||||||
Sbjct: 114792 cagcttcatggacacatgac 114773
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>emb|BX511158.5| Zebrafish DNA sequence from clone DKEY-28B4 in linkage group 1,
             complete sequence
          Length = 198706

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   ccacatgctgctcaatggta 464
             ||||||||||||||||||||
Sbjct: 16613 ccacatgctgctcaatggta 16632
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 163     cacacaaaattccaaaccaaaata 186
               ||||||||| ||||||||||||||
Sbjct: 5782574 cacacaaaaatccaaaccaaaata 5782551
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>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence
          Length = 178624

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    acaaaaaaccctggaaacca 350
              ||||||||||||||||||||
Sbjct: 120867 acaaaaaaccctggaaacca 120886
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>ref|NM_001002113.1| Danio rerio zgc:86830 (zgc:86830), mRNA
          Length = 2053

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ccacatgctgctcaatggta 464
           ||||||||||||||||||||
Sbjct: 349 ccacatgctgctcaatggta 330
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>emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chromosome X, complete
             sequence
          Length = 47355

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   gctatatgatttgatttggc 235
             ||||||||||||||||||||
Sbjct: 15902 gctatatgatttgatttggc 15921
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             ||||||||| ||||||||||||||
Sbjct: 12376 cacacaaaaatccaaaccaaaata 12353
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>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             ||||||||| ||||||||||||||
Sbjct: 72088 cacacaaaaatccaaaccaaaata 72065
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>emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, complete sequence
          Length = 149316

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   aataacaacacacacagaca 98
            ||||||||||||||||||||
Sbjct: 5092 aataacaacacacacagaca 5073
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>gb|BC071481.1| Danio rerio zgc:86830, mRNA (cDNA clone MGC:86830 IMAGE:6902138),
           complete cds
          Length = 2053

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ccacatgctgctcaatggta 464
           ||||||||||||||||||||
Sbjct: 349 ccacatgctgctcaatggta 330
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    atggatgaaccagaaaccag 290
              ||||||||||||||||||||
Sbjct: 328902 atggatgaaccagaaaccag 328883
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>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    ccaccatcagcctacacatg 273
              ||||||||||||||||||||
Sbjct: 107879 ccaccatcagcctacacatg 107898
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>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence
          Length = 175110

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   agaactcttccacacgcaca 166
             ||||||||||||||||||||
Sbjct: 82753 agaactcttccacacgcaca 82772
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>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9,
             complete sequence
          Length = 150766

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aataacaacacacacagaca 98
             ||||||||||||||||||||
Sbjct: 94620 aataacaacacacacagaca 94639
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>emb|AL132666.8|CNS01DT8 Human chromosome 14 DNA sequence BAC R-16N22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   tccttcttcccatcccaccatcag 263
             |||||||||||||||| |||||||
Sbjct: 43375 tccttcttcccatccctccatcag 43398
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>gb|M62736.1|TRBSIALB T.cruzi sialidase (SA85-1.2) mRNA, 3' end
          Length = 2305

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tggcgacctccttcttccca 251
            ||||||||||||||||||||
Sbjct: 1124 tggcgacctccttcttccca 1105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,739,970
Number of Sequences: 3902068
Number of extensions: 5739970
Number of successful extensions: 112795
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112662
Number of HSP's gapped (non-prelim): 133
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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