ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467017.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
2ref|XM_467026.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
5dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
6dbj|AK100979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
7emb|BX510914.13| Zebrafish DNA sequence from clone DKEY-4D9 in l... 46 0.092
8emb|BX072571.9| Zebrafish DNA sequence from clone DKEY-238F24, c... 46 0.092
9emb|CR932377.17| Zebrafish DNA sequence from clone DKEY-238H15 i... 44 0.36
10gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.7
11emb|AL078611.1|HSB5E3 Human DNA sequence from clone SC22CB-5E3 o... 40 5.7
12ref|XM_969503.1| PREDICTED: Tribolium castaneum similar to CG692... 40 5.7
13emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 5.7
14emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 i... 40 5.7
15emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, ... 40 5.7
16emb|BX324154.5| Zebrafish DNA sequence from clone DKEY-65L24 in ... 40 5.7
17emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 i... 40 5.7
18gb|AC023545.16| Homo sapiens chromosome 15, clone RP11-665J16, c... 40 5.7
19gb|AC006091.10|AC006091 Drosophila melanogaster, chromosome 3R, ... 40 5.7
20gb|AC008141.3|AC008141 Drosophila melanogaster, chromosome 3R, r... 40 5.7
21gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, comple... 40 5.7
22gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, com... 40 5.7
23gb|AY206718.1| Homo sapiens peroxisome proliferative activated r... 40 5.7
24dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.7
25emb|AL954666.10| Zebrafish DNA sequence from clone CH211-81I19 i... 40 5.7
26emb|CR762435.19| Zebrafish DNA sequence from clone CH211-238C15 ... 40 5.7
27emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 i... 40 5.7
28gb|AE003725.2| Drosophila melanogaster chromosome 3R, section 63... 40 5.7

>ref|XM_467017.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1953

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 368  aacgaggggatcccacatctccagccgttggaggagcgccg 408
            ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 1946 aacgaagggatcccgtatctccagccgttggaggatcgccg 1906



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>ref|XM_467026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3149

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 368  aacgaggggatcccacatctccagccgttggaggagcgccg 408
            ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 2913 aacgaagggatcccgtatctccagccgttggaggatcgccg 2873



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 368      aacgaggggatcccacatctccagccgttggaggagcgccg 408
                ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 25991363 aacgaagggatcccgtatctccagccgttggaggatcgccg 25991403



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 368      aacgaggggatcccacatctccagccgttggaggagcgccg 408
                ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 25941196 aacgaagggatcccgtatctccagccgttggaggatcgccg 25941236



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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1282_H11
          Length = 143314

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 368    aacgaggggatcccacatctccagccgttggaggagcgccg 408
              ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 142704 aacgaagggatcccgtatctccagccgttggaggatcgccg 142744



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 368   aacgaggggatcccacatctccagccgttggaggagcgccg 408
             ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 92537 aacgaagggatcccgtatctccagccgttggaggatcgccg 92577



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>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030D07
          Length = 133321

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 368   aacgaggggatcccacatctccagccgttggaggagcgccg 408
             ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 55236 aacgaagggatcccgtatctccagccgttggaggatcgccg 55276



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 368  aacgaggggatcccacatctccagccgttggaggagcgccg 408
            ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 5069 aacgaagggatcccgtatctccagccgttggaggatcgccg 5109



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>dbj|AK100979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144I23, full
            insert sequence
          Length = 3297

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 368  aacgaggggatcccacatctccagccgttggaggagcgccg 408
            ||||| ||||||||  ||||||||||||||||||| |||||
Sbjct: 2913 aacgaagggatcccgtatctccagccgttggaggatcgccg 2873



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>emb|BX510914.13| Zebrafish DNA sequence from clone DKEY-4D9 in linkage group 2, complete
             sequence
          Length = 108843

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 345   caaccaaccaattcaatcaacca 367
             |||||||||||||||||||||||
Sbjct: 96541 caaccaaccaattcaatcaacca 96519



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>emb|BX072571.9| Zebrafish DNA sequence from clone DKEY-238F24, complete sequence
          Length = 140346

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 345   caaccaaccaattcaatcaacca 367
             |||||||||||||||||||||||
Sbjct: 82817 caaccaaccaattcaatcaacca 82795



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>emb|CR932377.17| Zebrafish DNA sequence from clone DKEY-238H15 in linkage group 13,
             complete sequence
          Length = 100320

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 343   atcaaccaaccaattcaatcaaccaa 368
             ||||||||||||| ||||||||||||
Sbjct: 76058 atcaaccaaccaaatcaatcaaccaa 76083



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 343   atcaaccaaccaattcaatcaaccaa 368
             ||||||||||||| ||||||||||||
Sbjct: 75784 atcaaccaaccaaatcaatcaaccaa 75809



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 291     tggtcagccgcatcatcctg 310
               ||||||||||||||||||||
Sbjct: 2369338 tggtcagccgcatcatcctg 2369357



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>emb|AL078611.1|HSB5E3 Human DNA sequence from clone SC22CB-5E3 on chromosome 22 Contains the
             3' end of the PKDREJ gene for polycystic kidney disease
             (polycystin) and REJ (sperm receptor for egg jelly, sea
             urchin homolog)-like, the 3' end of the PPARA gene for
             peroxisome proliferator activated receptor, a novel gene,
             ESTs, STSs, GSSs and a putative CpG island, complete
             sequence
          Length = 40981

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caggcaacaccccaagacat 259
             ||||||||||||||||||||
Sbjct: 31966 caggcaacaccccaagacat 31985



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>ref|XM_969503.1| PREDICTED: Tribolium castaneum similar to CG6927-PA (LOC663460),
           mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 gatcaaacccccaacgcatg 207
           ||||||||||||||||||||
Sbjct: 261 gatcaaacccccaacgcatg 280



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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     aaaccgcgcaccaaaccggg 173
               ||||||||||||||||||||
Sbjct: 4382819 aaaccgcgcaccaaaccggg 4382838



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>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22,
             complete sequence
          Length = 195552

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   caaccaaccaattcaatcaaccaa 368
             ||||||| ||||||||||||||||
Sbjct: 49563 caaccaatcaattcaatcaaccaa 49586



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>emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, complete sequence
          Length = 141840

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 345   caaccaaccaattcaatcaaccaa 368
             ||||||| ||||||||||||||||
Sbjct: 80149 caaccaatcaattcaatcaaccaa 80126



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>emb|BX324154.5| Zebrafish DNA sequence from clone DKEY-65L24 in linkage group 5,
             complete sequence
          Length = 148743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   caaccaattcaatcaaccaa 368
             ||||||||||||||||||||
Sbjct: 65122 caaccaattcaatcaaccaa 65103



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>emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 in linkage group 2,
             complete sequence
          Length = 141447

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 345   caaccaaccaattcaatcaaccaa 368
             ||||||||||| ||||||||||||
Sbjct: 66355 caaccaaccaaatcaatcaaccaa 66332



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>gb|AC023545.16| Homo sapiens chromosome 15, clone RP11-665J16, complete sequence
          Length = 108173

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   caaccaaccaattcaatcaa 364
             ||||||||||||||||||||
Sbjct: 81172 caaccaaccaattcaatcaa 81191



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>gb|AC006091.10|AC006091 Drosophila melanogaster, chromosome 3R, region 91F1-91F13, BAC clone
              BACR48G05, complete sequence
          Length = 174118

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    aaccaaccaattcaatcaac 365
              ||||||||||||||||||||
Sbjct: 164208 aaccaaccaattcaatcaac 164227



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>gb|AC008141.3|AC008141 Drosophila melanogaster, chromosome 3R, region 91F-91F, BAC clone
             BACR17F04, complete sequence
          Length = 133863

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   aaccaaccaattcaatcaac 365
             ||||||||||||||||||||
Sbjct: 85731 aaccaaccaattcaatcaac 85750



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>gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, complete sequence
          Length = 154406

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aacaaccattttttacagat 29
              ||||||||||||||||||||
Sbjct: 117470 aacaaccattttttacagat 117451



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>gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, complete sequence
          Length = 147392

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    caaccaaccaattcaatcaa 364
              ||||||||||||||||||||
Sbjct: 134307 caaccaaccaattcaatcaa 134288



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>gb|AY206718.1| Homo sapiens peroxisome proliferative activated receptor, alpha (PPARA)
             gene, complete cds
          Length = 86215

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caggcaacaccccaagacat 259
             ||||||||||||||||||||
Sbjct: 76291 caggcaacaccccaagacat 76272



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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     aaaccgcgcaccaaaccggg 173
               ||||||||||||||||||||
Sbjct: 4495924 aaaccgcgcaccaaaccggg 4495943



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>emb|AL954666.10| Zebrafish DNA sequence from clone CH211-81I19 in linkage group 24,
             complete sequence
          Length = 163872

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 345   caaccaaccaattcaatcaaccaa 368
             ||||||||||| ||||||||||||
Sbjct: 22851 caaccaaccaactcaatcaaccaa 22828



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>emb|CR762435.19| Zebrafish DNA sequence from clone CH211-238C15 in linkage group 18,
             complete sequence
          Length = 157544

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   caaccaaccaattcaatcaaccaa 368
             ||||||||||| ||||||||||||
Sbjct: 57678 caaccaaccaaatcaatcaaccaa 57701



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>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19,
              complete sequence
          Length = 171679

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 345    caaccaaccaattcaatcaaccaa 368
              ||||||||||||| ||||||||||
Sbjct: 168503 caaccaaccaattaaatcaaccaa 168526



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>gb|AE003725.2| Drosophila melanogaster chromosome 3R, section 63 of 118 of the complete
              sequence
          Length = 253323

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    aaccaaccaattcaatcaac 365
              ||||||||||||||||||||
Sbjct: 121850 aaccaaccaattcaatcaac 121869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,991,544
Number of Sequences: 3902068
Number of extensions: 2991544
Number of successful extensions: 51413
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51271
Number of HSP's gapped (non-prelim): 142
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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