Clone Name | rbastl29a04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1953 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 1946 aacgaagggatcccgtatctccagccgttggaggatcgccg 1906
>ref|XM_467026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3149 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 2913 aacgaagggatcccgtatctccagccgttggaggatcgccg 2873
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 25991363 aacgaagggatcccgtatctccagccgttggaggatcgccg 25991403 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 25941196 aacgaagggatcccgtatctccagccgttggaggatcgccg 25941236
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 142704 aacgaagggatcccgtatctccagccgttggaggatcgccg 142744 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 92537 aacgaagggatcccgtatctccagccgttggaggatcgccg 92577
>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030D07 Length = 133321 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 55236 aacgaagggatcccgtatctccagccgttggaggatcgccg 55276 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 5069 aacgaagggatcccgtatctccagccgttggaggatcgccg 5109
>dbj|AK100979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144I23, full insert sequence Length = 3297 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 368 aacgaggggatcccacatctccagccgttggaggagcgccg 408 ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 2913 aacgaagggatcccgtatctccagccgttggaggatcgccg 2873
>emb|BX510914.13| Zebrafish DNA sequence from clone DKEY-4D9 in linkage group 2, complete sequence Length = 108843 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaacca 367 ||||||||||||||||||||||| Sbjct: 96541 caaccaaccaattcaatcaacca 96519
>emb|BX072571.9| Zebrafish DNA sequence from clone DKEY-238F24, complete sequence Length = 140346 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaacca 367 ||||||||||||||||||||||| Sbjct: 82817 caaccaaccaattcaatcaacca 82795
>emb|CR932377.17| Zebrafish DNA sequence from clone DKEY-238H15 in linkage group 13, complete sequence Length = 100320 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 343 atcaaccaaccaattcaatcaaccaa 368 ||||||||||||| |||||||||||| Sbjct: 76058 atcaaccaaccaaatcaatcaaccaa 76083 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 343 atcaaccaaccaattcaatcaaccaa 368 ||||||||||||| |||||||||||| Sbjct: 75784 atcaaccaaccaaatcaatcaaccaa 75809
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tggtcagccgcatcatcctg 310 |||||||||||||||||||| Sbjct: 2369338 tggtcagccgcatcatcctg 2369357
>emb|AL078611.1|HSB5E3 Human DNA sequence from clone SC22CB-5E3 on chromosome 22 Contains the 3' end of the PKDREJ gene for polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly, sea urchin homolog)-like, the 3' end of the PPARA gene for peroxisome proliferator activated receptor, a novel gene, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 40981 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 caggcaacaccccaagacat 259 |||||||||||||||||||| Sbjct: 31966 caggcaacaccccaagacat 31985
>ref|XM_969503.1| PREDICTED: Tribolium castaneum similar to CG6927-PA (LOC663460), mRNA Length = 1554 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gatcaaacccccaacgcatg 207 |||||||||||||||||||| Sbjct: 261 gatcaaacccccaacgcatg 280
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaccgcgcaccaaaccggg 173 |||||||||||||||||||| Sbjct: 4382819 aaaccgcgcaccaaaccggg 4382838
>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22, complete sequence Length = 195552 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||| |||||||||||||||| Sbjct: 49563 caaccaatcaattcaatcaaccaa 49586
>emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, complete sequence Length = 141840 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||| |||||||||||||||| Sbjct: 80149 caaccaatcaattcaatcaaccaa 80126
>emb|BX324154.5| Zebrafish DNA sequence from clone DKEY-65L24 in linkage group 5, complete sequence Length = 148743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 caaccaattcaatcaaccaa 368 |||||||||||||||||||| Sbjct: 65122 caaccaattcaatcaaccaa 65103
>emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 in linkage group 2, complete sequence Length = 141447 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||||||| |||||||||||| Sbjct: 66355 caaccaaccaaatcaatcaaccaa 66332
>gb|AC023545.16| Homo sapiens chromosome 15, clone RP11-665J16, complete sequence Length = 108173 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 caaccaaccaattcaatcaa 364 |||||||||||||||||||| Sbjct: 81172 caaccaaccaattcaatcaa 81191
>gb|AC006091.10|AC006091 Drosophila melanogaster, chromosome 3R, region 91F1-91F13, BAC clone BACR48G05, complete sequence Length = 174118 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 aaccaaccaattcaatcaac 365 |||||||||||||||||||| Sbjct: 164208 aaccaaccaattcaatcaac 164227
>gb|AC008141.3|AC008141 Drosophila melanogaster, chromosome 3R, region 91F-91F, BAC clone BACR17F04, complete sequence Length = 133863 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 aaccaaccaattcaatcaac 365 |||||||||||||||||||| Sbjct: 85731 aaccaaccaattcaatcaac 85750
>gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, complete sequence Length = 154406 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aacaaccattttttacagat 29 |||||||||||||||||||| Sbjct: 117470 aacaaccattttttacagat 117451
>gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, complete sequence Length = 147392 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaa 364 |||||||||||||||||||| Sbjct: 134307 caaccaaccaattcaatcaa 134288
>gb|AY206718.1| Homo sapiens peroxisome proliferative activated receptor, alpha (PPARA) gene, complete cds Length = 86215 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 caggcaacaccccaagacat 259 |||||||||||||||||||| Sbjct: 76291 caggcaacaccccaagacat 76272
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaccgcgcaccaaaccggg 173 |||||||||||||||||||| Sbjct: 4495924 aaaccgcgcaccaaaccggg 4495943
>emb|AL954666.10| Zebrafish DNA sequence from clone CH211-81I19 in linkage group 24, complete sequence Length = 163872 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||||||| |||||||||||| Sbjct: 22851 caaccaaccaactcaatcaaccaa 22828
>emb|CR762435.19| Zebrafish DNA sequence from clone CH211-238C15 in linkage group 18, complete sequence Length = 157544 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||||||| |||||||||||| Sbjct: 57678 caaccaaccaaatcaatcaaccaa 57701
>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19, complete sequence Length = 171679 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 caaccaaccaattcaatcaaccaa 368 ||||||||||||| |||||||||| Sbjct: 168503 caaccaaccaattaaatcaaccaa 168526
>gb|AE003725.2| Drosophila melanogaster chromosome 3R, section 63 of 118 of the complete sequence Length = 253323 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 aaccaaccaattcaatcaac 365 |||||||||||||||||||| Sbjct: 121850 aaccaaccaattcaatcaac 121869 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,991,544 Number of Sequences: 3902068 Number of extensions: 2991544 Number of successful extensions: 51413 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51271 Number of HSP's gapped (non-prelim): 142 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)