ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPS1_CITUN (O22060) Sucrose-phosphate synthase 1 (EC 2.4.1.14) (... 92 9e-19
2SPS_SPIOL (P31928) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 82 5e-16
3SPS_BETVU (P49031) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 80 2e-15
4SPS_VICFA (Q43876) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 79 6e-15
5SPS1_CRAPL (O04932) Sucrose-phosphate synthase 1 (EC 2.4.1.14) (... 78 1e-14
6SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 73 4e-13
7SPS2_CRAPL (O04933) Sucrose-phosphate synthase 2 (EC 2.4.1.14) (... 49 8e-06
8SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 45 7e-05
9SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 42 0.001
10NS1_IADE1 (P08272) Nonstructural protein 1 (NS1) (NS1A) (Fragment) 32 0.62
11REM1_MOUSE (O35929) GTP-binding protein REM 1 (Rad and Gem-like ... 32 1.0
12POLG_POL32 (P06209) Genome polyprotein [Contains: Coat protein V... 30 2.3
13NS1_IADU3 (P08270) Nonstructural protein 1 (NS1) (NS1A) (Fragment) 30 2.3
14POLG_POL3L (P03302) Genome polyprotein [Contains: Coat protein V... 30 3.1
15ZDH11_HUMAN (Q9H8X9) Probable palmitoyltransferase ZDHHC11 (EC 2... 30 3.1
16RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2 30 3.1
17ACA13_ARATH (Q9LIK7) Putative calcium-transporting ATPase 13, pl... 30 4.0
18YOP1_DEBHA (Q6BWH8) Protein YOP1 29 5.2
19TSP2_HUMAN (P35442) Thrombospondin-2 precursor 29 5.2
20YQY1_CAEEL (Q09560) Hypothetical protein F36G3.1 29 5.2
21CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate d... 29 5.2
22SELD_DESVH (Q72CF1) Selenide, water dikinase (EC 2.7.9.3) (Selen... 29 6.8
23NS1_IAHO3 (O56264) Nonstructural protein 1 (NS1) (NS1A) 29 6.8
24TSP2_MOUSE (Q03350) Thrombospondin-2 precursor 28 8.9
25WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7... 28 8.9
26TRM1_METAC (Q8TGX6) N(2),N(2)-dimethylguanosine tRNA methyltrans... 28 8.9
27R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 8.9
28R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 8.9
29R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 8.9
30R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 8.9

>SPS1_CITUN (O22060) Sucrose-phosphate synthase 1 (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase 1)
          Length = 1057

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 43/80 (53%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L  +VV VGESGD+DYE LLGG+H+T+ILKG  + ++N+IH  R YPL DV+ +DS NI+
Sbjct: 975  LSKMVVFVGESGDTDYEGLLGGVHKTVILKGICSSSSNQIHANRSYPLSDVMPIDSPNIV 1034

Query: 287  EV-QGCTTEDIKSALRHIGV 231
            +  + CTT DI+S+L  +G+
Sbjct: 1035 QTPEDCTTSDIRSSLEQLGL 1054



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>SPS_SPIOL (P31928) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1056

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 40/78 (51%), Positives = 53/78 (67%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L N VV VGESGD+DYE LLGG+H+T+ILKG  +  +N  H  R YP++ V+ +DS N+ 
Sbjct: 972  LSNFVVFVGESGDTDYEGLLGGVHKTVILKGIGSNTSN-FHATRAYPMEHVMPVDSPNMF 1030

Query: 287  EVQGCTTEDIKSALRHIG 234
            +  GC  +DI  AL  IG
Sbjct: 1031 QTGGCNIDDISDALSKIG 1048



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>SPS_BETVU (P49031) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1045

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L  +VV VGE GD+DYE LLGG+H+T+ILKG  N A   +H  R YPL  VV+LDS NI 
Sbjct: 965  LSKMVVFVGECGDTDYEGLLGGVHKTVILKGVSNTALRSLHANRSYPLSHVVSLDSPNIG 1024

Query: 287  EV-QGCTTEDIKS 252
            EV +GC++ +I+S
Sbjct: 1025 EVSKGCSSSEIQS 1037



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>SPS_VICFA (Q43876) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1059

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L  +VV VGE GD+DYE L+GGLH+++ILKG  + A +++H  R YPL DV+ LDS NI+
Sbjct: 977  LSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSRAISQLHNNRNYPLSDVMPLDSPNIV 1036

Query: 287  E-VQGCTTEDIKSALRHIG 234
            +  +G ++ DI++ L  +G
Sbjct: 1037 QATEGSSSADIQALLEKVG 1055



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>SPS1_CRAPL (O04932) Sucrose-phosphate synthase 1 (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase 1)
          Length = 1054

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L   VV+VGESGD+DYEE+LGG+H+T++L G    A N +H  R YPL DVV  D  NI 
Sbjct: 971  LSKTVVVVGESGDTDYEEMLGGVHKTVVLSGVCTTATNLLHANRSYPLADVVCFDDLNIF 1030

Query: 287  EV--QGCTTEDIKSALRHIG 234
            +   + C++ D+++ L   G
Sbjct: 1031 KTHNEECSSTDLRALLEEHG 1050



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>SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1053

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
 Frame = -1

Query: 467  LPNIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNII 288
            L  +VV VGESGD+DYE L+GGL + +I+KG    A++ IH  R YPL DV+  DS N+I
Sbjct: 971  LSKLVVFVGESGDTDYEGLIGGLRKAVIMKGLCTNASSLIHGNRNYPLSDVLPFDSPNVI 1030

Query: 287  EV-QGCTTEDIKSALRHIGV 231
            +  + C++ +I+  L  + V
Sbjct: 1031 QADEECSSTEIRCLLEKLAV 1050



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>SPS2_CRAPL (O04933) Sucrose-phosphate synthase 2 (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase 2)
          Length = 1081

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -1

Query: 461  NIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANR-IHTVRRYPLQDVVALDSSNIIE 285
            N+ VI+GE+GD+DYEEL+ G H+T+I++G     +   + T   Y   DV+  D+  I  
Sbjct: 1000 NMYVILGETGDTDYEELISGTHKTLIMRGVVEKGSEELLRTAGSYLRDDVIPQDTPLIAY 1059

Query: 284  V-QGCTTEDIKSALRHI 237
              +G   E I    R +
Sbjct: 1060 ADKGAKAEHIVETFRQL 1076



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>SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1049

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = -1

Query: 461  NIVVIVGESGDSDYEELLGGLHRTIILKGDFNIAANR-IHTVRRYPLQDVVALDSSNIIE 285
            N+ +IVGE GD+D+EE+L GLH+T+I++G     + + + +   Y  +DV   +S  I  
Sbjct: 982  NMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQREDVFPSESPLIAF 1041

Query: 284  VQG 276
             +G
Sbjct: 1042 TKG 1044



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>SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1068

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -1

Query: 461  NIVVIVGESGDSDYEELLGGLHRTIILKG 375
            N+ +I GE GD+D EE+L GLH+T+I++G
Sbjct: 985  NMYLITGEHGDTDLEEMLSGLHKTVIVRG 1013



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>NS1_IADE1 (P08272) Nonstructural protein 1 (NS1) (NS1A) (Fragment)|
          Length = 227

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = -1

Query: 401 LHRTIILKGDFNIAANRIHT---VRRYPLQDVVALDSSNIIEVQGCTTEDIKSAL 246
           + + IILK +F++  NR+ T   +R +  +  +  + S +  + G T ED+K+A+
Sbjct: 121 MDKNIILKANFSVICNRLETLILLRTFTEEGAIVGEISPLPSLPGHTDEDVKNAI 175



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>REM1_MOUSE (O35929) GTP-binding protein REM 1 (Rad and Gem-like GTP-binding|
           protein 1)
          Length = 297

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +3

Query: 102 LYNLQTKSAFPSSMEI-VALGLARTSSHFLLPFCGAPAKMLLCRHANVTQGRLDVLCSAT 278
           +Y++  +S+F S+ E+ + L     ++H  +   G  A +  CR  +V +GR    C+  
Sbjct: 159 VYSIADRSSFESASELRIQLRRTHQANHVPIILVGNKADLARCREVSVEEGR---ACAVV 215

Query: 279 LDFNDIGAVQCNDILQGVSPHCVDSVCGNVEVTLQDYGPVETP 407
            D      ++ +  LQ       + V   + +  QD    ETP
Sbjct: 216 FDCK---FIETSATLQHNVTELFEGVVRQLRLRRQDNAAPETP 255



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>POLG_POL32 (P06209) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2205

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
 Frame = +3

Query: 3   FPTTFIILSTSKFVNSTN--------------------KRWKLFTARGYTTPTLYNLQTK 122
           F   F  + T+ F NS N                    K W  +T +  + P+++   T 
Sbjct: 705 FDMEFTFVVTANFTNSNNGHALNQVYQIMYIPPGAPTPKSWDDYTWQTSSNPSIF--YTY 762

Query: 123 SAFPSSMEIVALGLARTSSHFLLPFCGAPAK 215
            A P+ + +  +GLA   SHF   F   P K
Sbjct: 763 GAAPARISVPYVGLANAYSHFYDGFAKVPLK 793



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>NS1_IADU3 (P08270) Nonstructural protein 1 (NS1) (NS1A) (Fragment)|
          Length = 227

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -1

Query: 401 LHRTIILKGDFNIAANRIHT---VRRYPLQDVVALDSSNIIEVQGCTTEDIKSAL 246
           + + IILK +F++  NR+ T   +R +     +  + S +  + G T ED+K+A+
Sbjct: 121 MDKDIILKANFSVIFNRLETLILLRAFTEDGAIVGEISPLPSLPGHTDEDVKNAI 175



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>POLG_POL3L (P03302) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2205

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 51  TNKRWKLFTARGYTTPTLYNLQTKSAFPSSMEIVALGLARTSSHFLLPFCGAPAK 215
           T K W  +T +  + P+++   T  A P+ + +  +GLA   SHF   F   P K
Sbjct: 741 TPKSWDDYTWQTSSNPSIF--YTYGAAPARISVPYVGLANAYSHFYDGFAKVPLK 793



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>ZDH11_HUMAN (Q9H8X9) Probable palmitoyltransferase ZDHHC11 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 11) (DHHC-11)
           (Zinc finger protein 399)
          Length = 412

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 228 RHANVTQGRLDVLCSATLDFNDIGAVQCNDILQGVSPHC 344
           +HA+V Q +   LC  T++      + CN  + G   HC
Sbjct: 117 KHAHVIQNQFCHLCKVTVNKKTKHCISCNKCVSGFDHHC 155



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>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 393 DHNPEG*LQHCRKQNPHSEEIPLAGCRCTGQ 301
           D +P    Q C  Q PHS E+P AG R TGQ
Sbjct: 612 DPSPPWSTQVC--QGPHSSEMPPAGLRATGQ 640



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>ACA13_ARATH (Q9LIK7) Putative calcium-transporting ATPase 13, plasma|
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13)
          Length = 1017

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 18  IILSTSKFVNSTNKRWKLFTARGYTTPTLYN-----LQTKSAFPSSMEIVALGL 164
           ++L   K ++ +NK+W+L   + Y + TL N     ++    FP S+   A+ L
Sbjct: 19  VLLELPKTLSKSNKKWQLALIKLYCSRTLLNCAKHAIRKPGLFPRSLSYTAIDL 72



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>YOP1_DEBHA (Q6BWH8) Protein YOP1|
          Length = 177

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 259 MSSVVQPWTSMILELSSATTSCKGYLLTVWILFAAMLKSPFRIMVLW 399
           ++ +V P    +L L S TTS    LLT W++FA      F ++  W
Sbjct: 64  IAGLVIPGYFSLLALESTTTSDDTQLLTYWVVFAT-----FNVVEFW 105



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>TSP2_HUMAN (P35442) Thrombospondin-2 precursor|
          Length = 1172

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 299 SCPVQRHPARGISSLCGFCLRQC*SHPSGLWSCG-DPLAVLHNRNH 433
           SCPV      G  S   F   QC S P G WSCG  P+  L N  H
Sbjct: 547 SCPVD-----GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH 587



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>YQY1_CAEEL (Q09560) Hypothetical protein F36G3.1|
          Length = 964

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 267 CSATLDFNDIGAVQCNDILQ----GVSPHCVDSVCGNVEVTLQDYGPVETP 407
           CS+  +F D+  VQ  D+ Q    GVS    ++  GN +V + +    +TP
Sbjct: 109 CSSEEEFYDVDDVQIRDVAQQLLNGVSDDKTETEAGNNDVIIAEEDRADTP 159



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>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)|
          Length = 330

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 440 ESGDSDYEELLGGLHRTIILKGDFN-IAANRIHTV 339
           E G+  YEE +  L +T+I KG+   +AA RI  +
Sbjct: 73  EDGNESYEEAIDALKKTLIEKGELEPVAATRIDQI 107



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>SELD_DESVH (Q72CF1) Selenide, water dikinase (EC 2.7.9.3) (Selenophosphate|
           synthetase) (Selenium donor protein)
          Length = 351

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +3

Query: 108 NLQTKSAFPSSMEIVALGLARTSSHFLLPFCGAPAKMLLCRHANVTQGRLDVLCSATLDF 287
           ++ T    P+ +++VA GL    SH    FC     +    H  V    +D++  A    
Sbjct: 251 DVSTLPLMPAVLDLVATGLLPAGSHANRHFCSGNVSV----HPEVDSLLVDIVFDAQTS- 305

Query: 288 NDIGAVQCNDILQGVSPHCVDSVC 359
                     ++  V PH VD  C
Sbjct: 306 --------GGLILAVPPHLVDDAC 321



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>NS1_IAHO3 (O56264) Nonstructural protein 1 (NS1) (NS1A)|
          Length = 230

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -1

Query: 401 LHRTIILKGDFNIAANRIHT---VRRYPLQDVVALDSSNIIEVQGCTTEDIKSAL 246
           + + IILK +F++  NR+     +R +  +  +  + S +  + G T ED+K+A+
Sbjct: 124 MDKDIILKANFSVIFNRLEALILLRAFTDEGAIVGEISPLPSLPGHTEEDVKNAI 178



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>TSP2_MOUSE (Q03350) Thrombospondin-2 precursor|
          Length = 1172

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 299 SCPVQRHPARGISSLCGFCLRQC*SHPSGLWSCGD-PLAVLHNRNH 433
           SCP+      G  S   F   +C S P G WSCG  P+  L N  H
Sbjct: 547 SCPID-----GCLSNPCFPGAKCNSFPDGSWSCGSCPVGFLGNGTH 587



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>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
 Frame = +3

Query: 78   ARGYTT--PTLYNLQTKSAFPSSMEIVALGLARTSSHFLLPFCGAPAKMLLCRHANVTQG 251
            A G TT   TL ++ T ++FPS+   +++ L+ ++S   L      +   L + ++ +  
Sbjct: 1479 AAGSTTVGATLTSVSTTTSFPSTASQLSIQLSSSTSTPTLAETVVVSAHSLDKTSHSSTT 1538

Query: 252  RLDVLCSATLDFNDIGAVQCNDILQ--GVSPHCVDSVCGNVEVTLQDYGPVETP 407
             L    SA    +  GA   + I Q  G+ P  + SV  +  +  Q  GP  TP
Sbjct: 1539 GLAFSLSAPSSSSSPGAGVSSYISQPGGLHPLVIPSVIASTPILPQAAGPTSTP 1592



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>TRM1_METAC (Q8TGX6) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC|
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           (tRNA 2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 388

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 CPL*CNPGLQ*YWSCPV--QRHPARGISSLCGFCLRQC*SHPSGL 388
           C    N G++ Y + P+  + H   G+  L G C R+C  H  G+
Sbjct: 169 CGAHLNSGIRKYAAVPLNTEYHSEMGLRVLLGACARECAKHEKGM 213



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>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 404  GLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNIIEVQGCTT 267
            GL  T ILK D N     +    ++ +QDV  L    +  V+GC T
Sbjct: 4170 GLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNT 4215



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>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 404  GLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNIIEVQGCTT 267
            GL  T ILK D N     +    ++ +QDV  L    +  V+GC T
Sbjct: 4170 GLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNT 4215



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>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 404  GLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNIIEVQGCTT 267
            GL  T ILK D N     +    ++ +QDV  L    +  V+GC T
Sbjct: 4170 GLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNT 4215



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>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 404  GLHRTIILKGDFNIAANRIHTVRRYPLQDVVALDSSNIIEVQGCTT 267
            GL  T ILK D N     +    ++ +QDV  L    +  V+GC T
Sbjct: 4170 GLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNT 4215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,573,544
Number of Sequences: 219361
Number of extensions: 1626446
Number of successful extensions: 4214
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4212
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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