ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29a01 |
|---|---|
| Clone Library Name | barley_pub |
>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)| Length = 980 Score = 32.0 bits (71), Expect = 0.39 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -3 Query: 323 QLAMQCVDESAAARPTMGTVV 261 ++AM CV+E AAARPTM VV Sbjct: 944 KIAMMCVEEEAAARPTMREVV 964
>PROA_VIBAL (P16588) Alkaline serine exoprotease A precursor (EC 3.4.21.-)| Length = 534 Score = 31.6 bits (70), Expect = 0.51 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Frame = -2 Query: 231 PDGEGLNSAGSSATEFDGAGRGAPSHPYSDVE----ITRSSYGGAGDASDYMPYFEVKP 67 PD EG ++G + G+ G ++ Y DVE +T YGG+GDA Y+ F KP Sbjct: 431 PDPEGKLTSGVPVSGLSGSS-GQVAYYYVDVEAGQRLTVQMYGGSGDADLYL-RFGAKP 487
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -3 Query: 332 RFVQLAMQCVDESAAARPTMGTVVKEVR 249 R++++A++CVD+ + RP M VV +R Sbjct: 1100 RYLEIALRCVDDFPSKRPNMLQVVASLR 1127
>MTRC_NEIGO (P43505) Membrane fusion protein mtrC precursor| Length = 412 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 142 VAVRVRGRAPTGAVELGGRRAGRVEPLP-VGLVEQHGLTSLTTVPMVGR 285 VA+ + G GG+ AGR P P VG+V H T TV + GR Sbjct: 18 VALALSSCGKGGDAAQGGQPAGREAPAPVVGVVTVHPQTVALTVELPGR 66
>MANA_MYTED (Q8WPJ2) Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)| (Beta-mannanase) (Endo-beta-1,4-mannanase) (ManA) Length = 367 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Frame = -2 Query: 243 LLNEPDGEGLNSAGSSATEFD-----GAGRGAPSHPYSDVEITR 127 ++NEP+GE SS FD G+G G H YS EI R Sbjct: 174 IMNEPEGEIKPGESSSEPCFDTRHLSGSGAGWAGHLYSAQEIGR 217
>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -2 Query: 234 EPDGEGLNSAGSSATEFDGAGRGAPSHPYSD 142 EP GEG AT DGAGR +P+ P S+ Sbjct: 508 EPGGEG----SRPATPSDGAGRRSPARPASE 534
>CONN_DROME (Q01819) Connectin precursor| Length = 682 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Frame = -2 Query: 174 GRGAPSHPYSDVEITRSSYGGAGDASD--------YMPYFEVKPK*AP 55 G G+P ++DV++ +S+ +GDA D Y+ F +KP+ P Sbjct: 580 GAGSPVVGHNDVDVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLP 627
>DXS_MYCTU (P0A554) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 638 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +1 Query: 142 VAVRVRGRAPTGAVELGGRRAGRVEPLPVGLVEQHGLTSLTTVPMVG 282 VA+ PTG G R R+ VG+ EQH +TS + M G Sbjct: 335 VAITAAMPGPTGLTAFGQRFPDRL--FDVGIAEQHAMTSAAGLAMGG 379
>DXS_MYCBO (P0A555) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 638 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +1 Query: 142 VAVRVRGRAPTGAVELGGRRAGRVEPLPVGLVEQHGLTSLTTVPMVG 282 VA+ PTG G R R+ VG+ EQH +TS + M G Sbjct: 335 VAITAAMPGPTGLTAFGQRFPDRL--FDVGIAEQHAMTSAAGLAMGG 379
>FRDA_PROVU (P20922) Fumarate reductase flavoprotein subunit (EC 1.3.99.1)| Length = 598 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 5/30 (16%) Frame = -2 Query: 168 GAPSHPYSDVEITRSS-----YGGAGDASD 94 GAP YSDV+IT+S+ YGG A D Sbjct: 560 GAPRLEYSDVKITKSAPAKRVYGGEATAQD 589
>FPG_RHIME (Q59752) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (FAPY-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 300 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Frame = +1 Query: 142 VAVRVRGRAPTG----AVELGGRRAGRVEPLPVGLVEQHGLTSLTTV 270 V +R G PTG A L R AG+++PL L++Q + L + Sbjct: 147 VFLRGLGEEPTGNALDAAYLATRFAGKIQPLKAALLDQRTIAGLGNI 193
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 332 RFVQLAMQCVDESAAARPTMGTVVKEVR 249 R +Q+AM C+ E+ A RP M V+K ++ Sbjct: 1163 RLLQIAMLCLAETPAKRPNMLDVLKALK 1190
>CYSA1_CHRVO (Q7NX01) Sulfate/thiosulfate import ATP-binding protein cysA 1 (EC| 3.6.3.25) (Sulfate-transporting ATPase 1) Length = 358 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 130 GDLDVAVRVRGRAPTGAVELGGRRAGRVEPLPVG 231 G L A R+RG + TGAV +GG+ LP G Sbjct: 235 GFLGSANRIRGVSATGAVAVGGQTLAADHQLPHG 268
>THYG_HUMAN (P01266) Thyroglobulin precursor| Length = 2768 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Frame = +1 Query: 217 PLPVGLVEQHGLTSLTTVPM-VGR----AAADSSTHCIASC 324 P PVG ++ SL VP VGR A A S THC+ C Sbjct: 1475 PCPVGFYQEQA-GSLACVPCPVGRTTISAGAFSQTHCVTDC 1514
>KIT_CAPHI (Q28317) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 978 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 131 VISTSLYGCEGAPLPAPSNSVAD 199 V + SL GCEG PLP VAD Sbjct: 143 VTNYSLTGCEGKPLPKDLTFVAD 165
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 27.3 bits (59), Expect = 9.7 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%) Frame = -2 Query: 225 GEGLNSAGSSA--------TEFDGAGRGAPSHPY-SDVEITRSSYGGAGDA 100 GE L SAG+ E DG G G P H + D+E T S G D+ Sbjct: 57 GEKLKSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDS 107
>KIT_CANFA (O97799) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 975 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 131 VISTSLYGCEGAPLPAPSNSVAD 199 V + SL GCEG PLP VAD Sbjct: 145 VTNYSLRGCEGKPLPKDLTFVAD 167
>KIT_BOVIN (P43481) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 977 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 131 VISTSLYGCEGAPLPAPSNSVAD 199 V + SL GCEG PLP VAD Sbjct: 143 VTNYSLTGCEGKPLPKDLTFVAD 165
>YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I| Length = 521 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 174 GRGAPSHPYSDVEITRSSYGGAGDASDYMPYFE 76 G G D+++ R +Y GD SDY P E Sbjct: 276 GSGLVQTRLRDLDVRRGNYTPVGDCSDYRPTHE 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,922,556 Number of Sequences: 219361 Number of extensions: 552208 Number of successful extensions: 1901 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1897 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
