ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28h12 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 856 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256 EE R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + + Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 195 CLLSSTDAAGVSSRLELALPRRIQ 266 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 220 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 95 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = -3 Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 262 +E ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 429 KEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 363 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256 WD K KT L + EK KKER+ + D++ D Sbjct: 5 WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>Y1356_MYCBO (P64806) Hypothetical protein Mb1356| Length = 98 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -2 Query: 229 ETPAASVDERRQWHAQSW 176 + P A VD+RR WH W Sbjct: 68 DLPQAGVDDRRHWHTPCW 85
>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1| Length = 98 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -2 Query: 229 ETPAASVDERRQWHAQSW 176 + P A VD+RR WH W Sbjct: 68 DLPQAGVDDRRHWHTPCW 85
>SETB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase, H3 lysine-9| specific (EC 2.1.1.43) (Histone H3-K9 methyltransferase) (H3-K9-HMTase) (SET domain bifurcated 2) (Chronic lymphocytic leukemia deletion region gene 8 protein) Length = 719 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 162 LSYLNHDCACHCLLSSTDAAGVSSRLELALPRRIQRLHTATGA 290 LSY +HDC+ CL+ + L+L + QR H T + Sbjct: 140 LSYQSHDCSGACLMKMPLNLKGENPLQLPIKCHFQRRHAKTNS 182
>GVPA1_STRCO (Q9ZC13) Probable gas vesicle structural protein 1 (GVP)| Length = 144 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/66 (28%), Positives = 25/66 (37%) Frame = -1 Query: 392 GLPDLKGARDGTQRRGRQLSRTWNSSXXXXXRKGCACGSMETLNPTRKSKLQAGGDPRRV 213 GLPDL G + RG+ KG G+ ET++ K GG R Sbjct: 80 GLPDLVGEMTESGARGKS--------------KGALSGAAETISDAFKQARDDGGSERET 125 Query: 212 GRREKA 195 R +A Sbjct: 126 SSRPRA 131
>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)| Length = 407 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 7/46 (15%) Frame = -3 Query: 396 EGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLW 280 EG+ ERGK W D +E KT+ + +E+ +E ++ER+ +W Sbjct: 118 EGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW 163
>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2301 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +2 Query: 197 PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 346 P L +R G GL P G C P+ RSL F+ CS FS +++ Sbjct: 949 PVLTFRIPGFGLTPAGRMLVCMGEKPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1002
>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +2 Query: 197 PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 346 P L +R G GL P G C P+ RSL F+ CS FS +++ Sbjct: 951 PVLTFRIPGFGLTPAGRMLVCMGEQPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1004
>PDXH_VIBF1 (Q5DYB5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 211 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -3 Query: 357 TKERKTALENLEQFQEKAKKERLRLW 280 T E+ TALEN++ F + K+ ++ W Sbjct: 110 TAEKLTALENMKYFTSRPKESQIAAW 135
>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)| Length = 715 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 375 RGKRWDTKERKTALENLEQFQEKAK 301 +GK + +ERKTA++ E+F +K K Sbjct: 297 KGKNANPQERKTAMKTAEEFLQKMK 321
>N4BM_HUMAN (O95298) NADH-ubiquinone oxidoreductase subunit B14.5b (EC 1.6.5.3)| (EC 1.6.99.3) (Complex I-B14.5b) (CI-B14.5b) Length = 119 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = -3 Query: 117 LVRKRDYIYAIRRRELY 67 LV++ DY+YA+R RE++ Sbjct: 74 LVKREDYLYAVRDREMF 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,711,750 Number of Sequences: 219361 Number of extensions: 752463 Number of successful extensions: 2466 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2462 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
