ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 33 0.16
2SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 33 0.16
3SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 33 0.16
4SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 33 0.16
5DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (... 30 1.1
6NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 30 1.1
7URED_SYNY3 (P73047) Urease accessory protein ureD 30 1.8
8DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC... 30 1.8
9DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (... 30 1.8
10DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (... 30 1.8
11DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (... 30 1.8
12CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E... 29 2.3
13MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-... 29 3.1
14DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 4.0
15DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 4.0
16DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 4.0
17Y1356_MYCBO (P64806) Hypothetical protein Mb1356 28 5.2
18Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1 28 5.2
19SETB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase... 28 5.2
20GVPA1_STRCO (Q9ZC13) Probable gas vesicle structural protein 1 (... 28 5.2
21Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (... 28 6.8
22POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein V... 27 8.9
23POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein V... 27 8.9
24PDXH_VIBF1 (Q5DYB5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.... 27 8.9
25ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein) 27 8.9
26N4BM_HUMAN (O95298) NADH-ubiquinone oxidoreductase subunit B14.5... 27 8.9

>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 856 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900



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>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256
           EE   R ER ++W  ++RKTA+EN+ + +++ ++ ++ + W   D + +
Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 CLLSSTDAAGVSSRLELALPRRIQ 266
           C  S TD AG +SRL L LP RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 220 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 95
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 256
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -3

Query: 399 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 262
           +E  ++ E+ ++ D KE+K   E  ++ ++K KKE+ R  + GD E
Sbjct: 429 KEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474



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>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like|
           protein (EC 2.1.1.62)
          Length = 608

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 363 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 256
           WD K  KT    L +  EK KKER+ +    D++ D
Sbjct: 5   WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 287 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 195
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>Y1356_MYCBO (P64806) Hypothetical protein Mb1356|
          Length = 98

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 229 ETPAASVDERRQWHAQSW 176
           + P A VD+RR WH   W
Sbjct: 68  DLPQAGVDDRRHWHTPCW 85



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>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1|
          Length = 98

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 229 ETPAASVDERRQWHAQSW 176
           + P A VD+RR WH   W
Sbjct: 68  DLPQAGVDDRRHWHTPCW 85



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>SETB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase, H3 lysine-9|
           specific (EC 2.1.1.43) (Histone H3-K9 methyltransferase)
           (H3-K9-HMTase) (SET domain bifurcated 2) (Chronic
           lymphocytic leukemia deletion region gene 8 protein)
          Length = 719

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 162 LSYLNHDCACHCLLSSTDAAGVSSRLELALPRRIQRLHTATGA 290
           LSY +HDC+  CL+         + L+L +    QR H  T +
Sbjct: 140 LSYQSHDCSGACLMKMPLNLKGENPLQLPIKCHFQRRHAKTNS 182



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>GVPA1_STRCO (Q9ZC13) Probable gas vesicle structural protein 1 (GVP)|
          Length = 144

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = -1

Query: 392 GLPDLKGARDGTQRRGRQLSRTWNSSXXXXXRKGCACGSMETLNPTRKSKLQAGGDPRRV 213
           GLPDL G    +  RG+               KG   G+ ET++   K     GG  R  
Sbjct: 80  GLPDLVGEMTESGARGKS--------------KGALSGAAETISDAFKQARDDGGSERET 125

Query: 212 GRREKA 195
             R +A
Sbjct: 126 SSRPRA 131



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>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)|
          Length = 407

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = -3

Query: 396 EGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLW 280
           EG+   ERGK W   D +E     KT+ + +E+ +E  ++ER+ +W
Sbjct: 118 EGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW 163



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>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2301

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 197  PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 346
            P L +R  G GL P G    C        P+   RSL    F+  CS FS +++
Sbjct: 949  PVLTFRIPGFGLTPAGRMLVCMGEKPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1002



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>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 197  PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 346
            P L +R  G GL P G    C        P+   RSL    F+  CS FS +++
Sbjct: 951  PVLTFRIPGFGLTPAGRMLVCMGEQPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1004



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>PDXH_VIBF1 (Q5DYB5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP|
           oxidase) (PNPOx)
          Length = 211

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 357 TKERKTALENLEQFQEKAKKERLRLW 280
           T E+ TALEN++ F  + K+ ++  W
Sbjct: 110 TAEKLTALENMKYFTSRPKESQIAAW 135



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>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)|
          Length = 715

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 375 RGKRWDTKERKTALENLEQFQEKAK 301
           +GK  + +ERKTA++  E+F +K K
Sbjct: 297 KGKNANPQERKTAMKTAEEFLQKMK 321



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>N4BM_HUMAN (O95298) NADH-ubiquinone oxidoreductase subunit B14.5b (EC 1.6.5.3)|
           (EC 1.6.99.3) (Complex I-B14.5b) (CI-B14.5b)
          Length = 119

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 117 LVRKRDYIYAIRRRELY 67
           LV++ DY+YA+R RE++
Sbjct: 74  LVKREDYLYAVRDREMF 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,711,750
Number of Sequences: 219361
Number of extensions: 752463
Number of successful extensions: 2466
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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