ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 30 1.6
2BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 29 2.7
3PHLC_CLOBI (P20419) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 28 6.0
4PHLC_CLOSO (Q8VUZ6) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 28 6.0
5COXN_BRAJA (P98000) Alternative cytochrome c oxidase subunit 1 (... 28 7.8

>PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase) (Beta
           toxin)
          Length = 399

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 147 WRRTGAKQLTELLNLGLHLRGEMQPPYLP*NL 242
           W++   +Q T LL  GLH  G+   PY P N+
Sbjct: 136 WKKGNYEQATWLLGQGLHYFGDFHTPYHPSNV 167



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>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
           (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
 Frame = +2

Query: 53  NNRSLGQLNIPFQTCRTVEWSQIDPNSTSSNLAKDGG--------KATN*TTELRVALEG 208
           NN+  G++   F  C  +EW     N  +  + KD G        +  N      +  E 
Sbjct: 456 NNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPEL 515

Query: 209 GNATTLPTLKSHRMLNYVTGALTP 280
           G  TTL  L  +   N++TG + P
Sbjct: 516 GKCTTLVWLDLN--TNHLTGEIPP 537



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>PHLC_CLOBI (P20419) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase) (Cbp)
          Length = 398

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 147 WRRTGAKQLTELLNLGLHLRGEMQPPY 227
           W +   K+ T LL  GLH  G++  PY
Sbjct: 135 WEKGNFKEATFLLGQGLHYLGDLNTPY 161



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>PHLC_CLOSO (Q8VUZ6) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase)
          Length = 399

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 WRRTGAKQLTELLNLGLHLRGEMQPPY 227
           W++   K+ T LL  G+H  G++  PY
Sbjct: 137 WKKGNYKEATFLLGQGMHYLGDLNTPY 163



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>COXN_BRAJA (P98000) Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1)|
           (Alternative cytochrome c oxidase polypeptide I)
           (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1)
          Length = 591

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -2

Query: 237 FKVGRVVAFPPSSATLSSVVQLVALPPSFARLLLV 133
           F++G     PPS+ +L++ + +VAL   FA+++ +
Sbjct: 480 FELGDAAFIPPSAHSLNAFITVVALTVGFAQMVFL 514


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,463,622
Number of Sequences: 219361
Number of extensions: 697474
Number of successful extensions: 1850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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