>gb|AY110438.1| Zea mays CL3068_1 mRNA sequence
          Length = 1022

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 124 tcatactgtacacttgcacaggatcta 150
           |||||||||||||||||||||| ||||
Sbjct: 77  tcatactgtacacttgcacaggctcta 103

>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0095K08, complete sequence
          Length = 180999

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    acaacaataataagttaattg 105
             |||||||||||||||||||||
Sbjct: 17267 acaacaataataagttaattg 17287

>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
             near S2137, complete sequence
          Length = 197516

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    acaacaataataagttaattg 105
             |||||||||||||||||||||
Sbjct: 61557 acaacaataataagttaattg 61537

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      acaacaataataagttaattg 105
               |||||||||||||||||||||
Sbjct: 7980681 acaacaataataagttaattg 7980661

>gb|AC006037.2| Homo sapiens BAC clone RP11-263G22 from 2, complete sequence
          Length = 108711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   atgtcagctgtgctgttgttg 304
             |||||||||||||||||||||
Sbjct: 27470 atgtcagctgtgctgttgttg 27490

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      acaacaataataagttaattg 105
               |||||||||||||||||||||
Sbjct: 8050768 acaacaataataagttaattg 8050748

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4444184 gctacaaatacaaatctatc 4444165

>gb|AF181895.6| Homo sapiens chromosome 8 clone CTD-2329M5 map p12, complete sequence
          Length = 109545

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   gttgctgttgctgttactct 368
             ||||||||||||||||||||
Sbjct: 94654 gttgctgttgctgttactct 94635

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 5059711 gctacaaatacaaatctatc 5059730

>gb|DQ334219.1| Drosophila miranda CG7597 gene, partial cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 ccgttgctgttgctgttact 366
           ||||||||||||||||||||
Sbjct: 428 ccgttgctgttgctgttact 409

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4724139 gctacaaatacaaatctatc 4724158

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4441837 gctacaaatacaaatctatc 4441856

>gb|AC046185.14| Homo sapiens chromosome 17, clone RP11-51F16, complete sequence
          Length = 173637

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ggagcaggccatgtcagctg 293
             ||||||||||||||||||||
Sbjct: 14888 ggagcaggccatgtcagctg 14907

>gb|AY164273.1| Lactococcus raffinolactis putative fructose 1,6-bisphosphatase (fbp),
            GalR (galR), alpha-galactosidase (aga), galactokinase
            (galK), galactose 1-phosphate uridylyltransferase (galT),
            putative transcriptional regulator, and putative
            sugar-specific PTS component EIIB gene, complete cds;
            putative sugar-specific PTS component EIIC gene, partial
            cds; and unknown gene
          Length = 12191

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  ttgactgaaaacgacagaca 205
            ||||||||||||||||||||
Sbjct: 9169 ttgactgaaaacgacagaca 9188

>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the
             Rabep1 gene for rabaptin, RAB GTPase binding effector
             protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a
             ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene
             for nucleoporin 88, four novel genes, the C1qbp gene for
             complement component 1 q subcomponent binding protein, the
             Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33,
             a  novel pseudogene, a CARD domain pseudogene and six CpG
             islands, complete sequence
          Length = 254116

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    ttctggttatagtaagataa 65
             ||||||||||||||||||||
Sbjct: 30563 ttctggttatagtaagataa 30582

>emb|BX936381.11| Zebrafish DNA sequence from clone CH211-152H14 in linkage group 17,
             complete sequence
          Length = 156270

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cgagaccaagttgtaaatta 45
             ||||||||||||||||||||
Sbjct: 44537 cgagaccaagttgtaaatta 44556

>gb|AC127900.6| Homo sapiens 12 BAC RP11-426H7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 38279

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 349  gttgctgttgctgttactct 368
            ||||||||||||||||||||
Sbjct: 3860 gttgctgttgctgttactct 3841

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4448494 gctacaaatacaaatctatc 4448513

>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence
          Length = 193991

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    gttgctgttgctgttactct 368
              ||||||||||||||||||||
Sbjct: 191086 gttgctgttgctgttactct 191105

>gb|AC103675.2| Homo sapiens chromosome 8, clone CTD-2329M5, complete sequence
          Length = 109550

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   gttgctgttgctgttactct 368
             ||||||||||||||||||||
Sbjct: 94658 gttgctgttgctgttactct 94639

>dbj|AK135266.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720449L24 product:unclassifiable, full insert
           sequence
          Length = 2138

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  ttctggttatagtaagataa 65
           ||||||||||||||||||||
Sbjct: 730 ttctggttatagtaagataa 749

>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively
               spliced, complete cds
          Length = 1421559

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     gttgctgttgctgttactct 368
               ||||||||||||||||||||
Sbjct: 1346099 gttgctgttgctgttactct 1346080

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gctcaaagcatcaaagatga 22
                ||||||||||||||||||||
Sbjct: 15131456 gctcaaagcatcaaagatga 15131475

>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gctcaaagcatcaaagatga 22
             ||||||||||||||||||||
Sbjct: 40069 gctcaaagcatcaaagatga 40088

>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence
          Length = 191583

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    ggagcaggccatgtcagctg 293
              ||||||||||||||||||||
Sbjct: 159435 ggagcaggccatgtcagctg 159454

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4436377 gctacaaatacaaatctatc 4436358

>gb|AY141202.1| Entamoeba histolytica ehapt2 retrotransposon and unknown gene
          Length = 3853

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  aacaataataagttaattga 106
           ||||||||||||||||||||
Sbjct: 514 aacaataataagttaattga 495

>gb|U14003.1|ECOUW93 Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes
          Length = 338534

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    gctacaaatacaaatctatc 251
              ||||||||||||||||||||
Sbjct: 134645 gctacaaatacaaatctatc 134664

>emb|BX005145.8| Zebrafish DNA sequence from clone CH211-120O1, complete sequence
          Length = 181056

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    tgatagagctacaaatacaa 244
              ||||||||||||||||||||
Sbjct: 140553 tgatagagctacaaatacaa 140572

>emb|AL032623.1|CEY43F8B Caenorhabditis elegans YAC Y43F8B, complete sequence
          Length = 101679

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   ttctcaataataattgactgaaaa 196
             |||||||||| |||||||||||||
Sbjct: 94764 ttctcaataaaaattgactgaaaa 94787

>gb|AC101704.15| Mus musculus chromosome 15, clone RP23-249O20, complete sequence
          Length = 173276

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tgtaaattattctggttata 56
              ||||||||||||||||||||
Sbjct: 121997 tgtaaattattctggttata 121978

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gctcaaagcatcaaagatga 22
                ||||||||||||||||||||
Sbjct: 15139697 gctcaaagcatcaaagatga 15139716

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 5329280 gctacaaatacaaatctatc 5329299

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 5299294 gctacaaatacaaatctatc 5299313

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4171410 gctacaaatacaaatctatc 4171429

>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     gctacaaatacaaatctatc 251
               ||||||||||||||||||||
Sbjct: 4279382 gctacaaatacaaatctatc 4279363


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,905,060
Number of Sequences: 3902068
Number of extensions: 3905060
Number of successful extensions: 87106
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86891
Number of HSP's gapped (non-prelim): 215
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)