ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
2dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
3dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 3e-17
5gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 98 3e-17
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
7gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 98 3e-17
8gb|AY109108.1| Zea mays PCO116815 mRNA sequence 96 1e-16
9gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
10gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence 72 2e-09
11dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
12gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
13gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
16ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative... 58 2e-05
17gb|AY112223.1| Zea mays CL3071_1 mRNA sequence 50 0.006
18gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can... 46 0.092
19gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 44 0.36
20gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 42 1.4
21ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING fin... 42 1.4
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25emb|AL845536.8| Mouse DNA sequence from clone RP23-311G5 on chro... 42 1.4
26gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 42 1.4
27emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 1.4
28gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 5.7
29ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute c... 40 5.7
30gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 40 5.7
31emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp... 40 5.7
32gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome... 40 5.7
33emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 5.7
34emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chro... 40 5.7
35emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chr... 40 5.7
36gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, comp... 40 5.7
37gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 40 5.7
38ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment ... 40 5.7
39gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 40 5.7
40gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, comp... 40 5.7
41gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 40 5.7
42gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 5.7
43gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc... 40 5.7
44gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 5.7
45ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 5.7
46gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA 40 5.7
47emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 5.7
48gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 5.7
49gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 5.7
50gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 5.7
51gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachm... 40 5.7
52emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 5.7
53gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C... 40 5.7 
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score =  143 bits (72), Expect = 5e-31
 Identities = 174/208 (83%)
 Strand = Plus / Minus

                                                                        
Query: 215  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033

                                                                        
Query: 275  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 334
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| 
Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 2973

                                                                        
Query: 335  agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatacggatagg 394
            |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  
Sbjct: 2972 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatacagacaaa 2913

                                        
Query: 395  tctttgtttacaacagcagttgaacagt 422
            ||||||||||||||||| |||| |||||
Sbjct: 2912 tctttgtttacaacagctgttgcacagt 2885
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>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score =  143 bits (72), Expect = 5e-31
 Identities = 174/208 (83%)
 Strand = Plus / Minus

                                                                        
Query: 215  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245

                                                                        
Query: 275  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 334
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| 
Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 3185

                                                                        
Query: 335  agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatacggatagg 394
            |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  
Sbjct: 3184 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatacagacaaa 3125

                                        
Query: 395  tctttgtttacaacagcagttgaacagt 422
            ||||||||||||||||| |||| |||||
Sbjct: 3124 tctttgtttacaacagctgttgcacagt 3097
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>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score =  119 bits (60), Expect = 8e-24
 Identities = 145/172 (84%), Gaps = 1/172 (0%)
 Strand = Plus / Minus

                                                                        
Query: 251  ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 310
            |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | ||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054

                                                                        
Query: 311  tggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagcccct 370
            || ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagagctcct 3994

                                                                
Query: 371  tgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
            || || || |||||||| ||||   ||||||| |||||||| |||| |||||
Sbjct: 3993 tggagttggaggtatacagata-aactttgttcacaacagctgttgcacagt 3943
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487

                                                                         
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
                | ||||| || ||||||||||| || |  ||||||||||||||||| |||| |||||
Sbjct: 27542486 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagt 27542430



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 99/117 (84%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                          
Query: 306    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856

                                                                       
Query: 366    ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
              | ||||| || || |||||||| ||||   ||||||| |||||||| |||| |||||
Sbjct: 651855 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagt 651800



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 215      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683

                                    
Query: 275      gcttccatcttctgagacag 294
                |||||||| ||||| |||||
Sbjct: 27542682 gcttccattttctgtgacag 27542663



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034

                                                              
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaacagc 411
                | |||||||||| |||||| || || |  |||||||| ||||||||
Sbjct: 12396035 ctccttgaagcttaaggtacaccgacaaatctttgttaacaacagc 12396080



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 251    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 300
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025
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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                         
Query: 306   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
             ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287

                                                                      
Query: 366   ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
             | ||||| || ||||||||||| || |  ||||||||||||||||| |||| |||||
Sbjct: 20288 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagt 20344



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 215   gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
             ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091

                                 
Query: 275   gcttccatcttctgagacag 294
             |||||||| ||||| |||||
Sbjct: 20092 gcttccattttctgtgacag 20111
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810

                                                                         
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
                | ||||| || ||||||||||| || |  ||||||||||||||||| |||| |||||
Sbjct: 27633809 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagt 27633753



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 99/117 (84%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                          
Query: 306    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854

                                                                       
Query: 366    ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
              | ||||| || || |||||||| ||||   ||||||| |||||||| |||| |||||
Sbjct: 651853 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagt 651798



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 215      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006

                                    
Query: 275      gcttccatcttctgagacag 294
                |||||||| ||||| |||||
Sbjct: 27634005 gcttccattttctgtgacag 27633986



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797

                                                              
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaacagc 411
                | |||||||||| |||||| || || |  |||||||| ||||||||
Sbjct: 12392798 ctccttgaagcttaaggtacaccgacaaatctttgttaacaacagc 12392843



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 251    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 300
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                        
Query: 306  acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
            ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027

                                                                     
Query: 366  ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
            | ||||| || ||||||||||| || |  ||||||||||||||||| |||| |||||
Sbjct: 8028 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagt 8084



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                        
Query: 215  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 274
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831

                                
Query: 275  gcttccatcttctgagacag 294
            |||||||| ||||| |||||
Sbjct: 7832 gcttccattttctgtgacag 7851
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>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 195/244 (79%)
 Strand = Plus / Minus

                                                                       
Query: 173 ttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttcctcatgtcc 232
           |||||||| |||| |||||||   |||||||| || || |||||||||||||||||||||
Sbjct: 792 ttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttcctcatgtcc 733

                                                                       
Query: 233 tcctcttggacactggggggagccttctctctgtaaccggacgcttccatcttctgagac 292
           ||||| || || ||  | ||||||||||| |  || || || || ||||| ||||| | |
Sbjct: 732 tcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccattttctgcgcc 673

                                                                       
Query: 293 agggcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccact 352
           || |||| ||||| |||||| || |||||  | || ||| ||||||||||  | ||  | 
Sbjct: 672 agtgcattctgtagcttttgaatctcatcttttttcttctttagcttttcacgttcagcg 613

                                                                       
Query: 353 tccgcatttagagccccttgaagctgaaggtatacggataggtctttgtttacaacagca 412
           || ||||||| ||| ||||| ||||||||||| || || | ||||||||| |||||||||
Sbjct: 612 tctgcatttaaagctccttggagctgaaggtacacagacaagtctttgttgacaacagca 553

               
Query: 413 gttg 416
           ||||
Sbjct: 552 gttg 549
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 99/117 (84%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                         
Query: 306   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
             ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737

                                                                      
Query: 366   ccccttgaagctgaaggtatacggataggtctttgtttacaacagcagttgaacagt 422
             | ||||| || || |||||||| ||||   ||||||| |||||||| |||| |||||
Sbjct: 37736 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagt 37681



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 251   ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 300
             |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
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>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 192/244 (78%)
 Strand = Plus / Minus

                                                                       
Query: 173 ttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttcctcatgtcc 232
           |||||||| |||| |||||||   ||||| || || || |||| |||||| |||||||||
Sbjct: 944 ttctcagcttcactgatgacctctagttgttccaacaaagcggggagctttctcatgtcc 885

                                                                       
Query: 233 tcctcttggacactggggggagccttctctctgtaaccggacgcttccatcttctgagac 292
           ||||| || || ||  | ||||||||||| |  || || || || ||||| ||||| | |
Sbjct: 884 tcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccattttctgtgcc 825

                                                                       
Query: 293 agggcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccact 352
           || ||||  |||| |||||| ||||||||  | || ||||||||||||||  ||||  | 
Sbjct: 824 agtgcattttgtagcttttgaatttcatcttttttcttccttagcttttcacgctcagca 765

                                                                       
Query: 353 tccgcatttagagccccttgaagctgaaggtatacggataggtctttgtttacaacagca 412
           ||  |||||| | | ||||| ||||||||||| || || | ||||||||| |||||||||
Sbjct: 764 tcttcatttaaatctccttggagctgaaggtacacagacaagtctttgttgacaacagca 705

               
Query: 413 gttg 416
           ||||
Sbjct: 704 gttg 701
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>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 296  gcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccacttcc 355
            ||||| |||| |||||||||| |||| ||||| ||||||||||||||  ||||  | || 
Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325

                                                                    
Query: 356  gcatttagagccccttgaagctgaaggtatacggataggtctttgtttacaacagc 411
            |||||||  || |||||||||| |||||| || || |  |||||||| ||||||||
Sbjct: 3324 gcatttatggctccttgaagcttaaggtacaccgacaaatctttgttaacaacagc 3269
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                          
Query: 306    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
              ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 141536 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 141477

                                                        
Query: 366    ccccttgaagctgaaggtatacggataggtctttgtttacaa 407
              | ||| | ||||| |||||||||||||| |||||||| ||||
Sbjct: 141476 ctcctcgtagctggaggtatacggatagatctttgttgacaa 141435
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                         
Query: 306   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
             ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052

                                                           
Query: 366   ccccttgaagctgaaggtatacggataggtctttgtttacaacagc 411
             | |||||||||| |||||| || || |  |||||||| ||||||||
Sbjct: 55053 ctccttgaagcttaaggtacaccgacaaatctttgttaacaacagc 55098
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18843800 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18843741

                                                          
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaa 407
                | ||| | ||||| |||||||||||||| |||||||| ||||
Sbjct: 18843740 ctcctcgtagctggaggtatacggatagatctttgttgacaa 18843699
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                            
Query: 306      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 365
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18855054 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18854995

                                                          
Query: 366      ccccttgaagctgaaggtatacggataggtctttgtttacaa 407
                | ||| | ||||| |||||||||||||| |||||||| ||||
Sbjct: 18854994 ctcctcgtagctggaggtatacggatagatctttgttgacaa 18854953
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>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase
            (OSJNBa0062C05.27), mRNA
          Length = 3171

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 307  cttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagc 366
            |||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  ||||||||
Sbjct: 3015 cttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagagc 2956

                                                     
Query: 367  cccttgaagctgaaggtatacggataggtctttgtttacaa 407
             ||| | ||||| |||||||||||||| |||||||| ||||
Sbjct: 2955 tcctcgtagctggaggtatacggatagatctttgttgacaa 2915
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>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 368 ccttgaagctgaaggtatacggataggtctttgtttacaacagcagttg 416
           ||||| ||||||||||| || || | ||||||||| |||||||||||||
Sbjct: 650 ccttggagctgaaggtacacagacaagtctttgttgacaacagcagttg 698



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 173 ttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttcctcatgtcc 232
           |||||||| |||| |||||||   ||||| || || || ||||||||||| |||||||||
Sbjct: 455 ttctcagcttcactgatgacctctagttgttccaacaaagcggtgagctttctcatgtcc 514

                
Query: 233 tcctc 237
           |||||
Sbjct: 515 tcctc 519
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>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 28     tttgaattttctataaatgtgacatca 54
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 26    catttgaattttctataaatgt 47
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687
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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    atttgaattttctataaatgt 47
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196
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>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 180  cctcaccgatgacccgcagttgctc 204
            ||||||||||||| |||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 81      tatcaacttccaaacaaaaat 101
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     tatcaacttccaaacaaaaat 101
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064
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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    tatcaacttccaaacaaaaat 101
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457
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>emb|AL845536.8| Mouse DNA sequence from clone RP23-311G5 on chromosome 2, complete
              sequence
          Length = 179612

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 393    ggtctttgtttacaacagcagttga 417
              ||||||||| |||||||||||||||
Sbjct: 163591 ggtctttgtctacaacagcagttga 163567
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>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    ttacgcatctagtttctccag 172
              |||||||||||||||||||||
Sbjct: 162848 ttacgcatctagtttctccag 162828
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>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     aatgtgacatcaccaccatcc 63
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002
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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ccatttgaattttctataaa 44
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189
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>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7
            (cationic amino acid transporter, y+ system), member 3
            (LOC486643), mRNA
          Length = 3279

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  atgctgtaacttttggattt 317
            ||||||||||||||||||||
Sbjct: 1571 atgctgtaacttttggattt 1590
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>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aacttccaaacaaaaatgcc 104
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766
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>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aacttccaaacaaaaatgcc 104
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668
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>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence
          Length = 199202

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 360   ttagagccccttgaagctgaaggt 383
             ||||| ||||||||||||||||||
Sbjct: 47915 ttagatccccttgaagctgaaggt 47938
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>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
             HHEX gene for hematopoietically expressed homeobox, the 5'
             end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
             eukaryotic translation initiation factor 2 subunit 2
             (eIF-2-beta) pseudogene and four CpG islands, complete
             sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   agagccccttgaagctgaag 381
             ||||||||||||||||||||
Sbjct: 76717 agagccccttgaagctgaag 76736
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>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gagcttcctcatgtcctcct 236
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735
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>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a
             ribosomal protein S18 (Rps18) pseudogene, complete
             sequence
          Length = 156572

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ttccatcttctgagacaggg 296
             ||||||||||||||||||||
Sbjct: 31116 ttccatcttctgagacaggg 31135
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>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence
          Length = 198687

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    cctctttttccttagctttt 341
              ||||||||||||||||||||
Sbjct: 147791 cctctttttccttagctttt 147772
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>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcttcctcatgtcctcctct 238
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526
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>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743
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>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gaattttctataaatgtgac 50
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223
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>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   attttctataaatgtgacat 52
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980
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>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aacttccaaacaaaaatgcc 104
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621
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>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     tgaattttctataaatgtga 49
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076
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>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     catttgaattttctataaat 45
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080
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>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    attttctataaatgtgacat 52
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793
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>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cttcctcatgtcctcctctt 239
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986
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>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711
to top
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    atgtgacatcaccaccatcc 63
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026
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>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    ctgtaacttttggatttcat 320
              ||||||||||||||||||||
Sbjct: 161157 ctgtaacttttggatttcat 161138
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>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gaattttctataaatgtgac 50
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377
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>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tgaattttctataaatgtga 49
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358
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>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699
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>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tttgaattttctataaatgt 47
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461
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>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   cttttggatttcatccctct 326
             ||||||||||||||||||||
Sbjct: 59407 cttttggatttcatccctct 59388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,393,869
Number of Sequences: 3902068
Number of extensions: 4393869
Number of successful extensions: 123931
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123623
Number of HSP's gapped (non-prelim): 301
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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