ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosom... 42 1.5
2gb|AC079244.29| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 1.5
3gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 1.5
4gb|U41849.1|SCU41849 Saccharomyces cerevisiae chromosome XVI, le... 42 1.5
5ref|NM_101907.2| Arabidopsis thaliana transferase, transferring ... 40 5.8
6gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, com... 40 5.8
7gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosom... 40 5.8
8gb|AC122734.6| Mus musculus chromosome 10, clone RP24-108E17, co... 40 5.8
9emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chro... 40 5.8
10gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete... 40 5.8
11gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana... 40 5.8
12gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana... 40 5.8
13gb|AC091681.44| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.8

>gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosome 9, complete sequence
          Length = 181083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 376   caccagaaccaccaaggaact 396
             |||||||||||||||||||||
Sbjct: 65393 caccagaaccaccaaggaact 65373



to top

>gb|AC079244.29| Mus musculus strain C57BL/6J chromosome 9 clone rp23-343k17, complete
              sequence
          Length = 223861

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 376    caccagaaccaccaaggaact 396
              |||||||||||||||||||||
Sbjct: 209221 caccagaaccaccaaggaact 209201



to top

>gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone rp23-426k2, complete
              sequence
          Length = 213098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 376    caccagaaccaccaaggaact 396
              |||||||||||||||||||||
Sbjct: 209103 caccagaaccaccaaggaact 209123



to top

>gb|U41849.1|SCU41849 Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8204
          Length = 35868

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   ctactcctacttctgccaaaa 237
             |||||||||||||||||||||
Sbjct: 34446 ctactcctacttctgccaaaa 34426



to top

>ref|NM_101907.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
            tubulin binding AT1G20570 mRNA, complete cds
          Length = 2931

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ttagatgctgaaacaacaag 124
            ||||||||||||||||||||
Sbjct: 1502 ttagatgctgaaacaacaag 1483



to top

>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence
          Length = 222682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 311    gataggaggctaacatggcggtca 334
              |||||||||||||||| |||||||
Sbjct: 150567 gataggaggctaacatagcggtca 150544



to top

>gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosome 1, complete sequence
          Length = 177383

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    aagagcatgaaagcacaggc 266
              ||||||||||||||||||||
Sbjct: 116549 aagagcatgaaagcacaggc 116568



to top

>gb|AC122734.6| Mus musculus chromosome 10, clone RP24-108E17, complete sequence
          Length = 178230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aatttttgtctgactgaaca 56
             ||||||||||||||||||||
Sbjct: 91773 aatttttgtctgactgaaca 91792



to top

>emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chromosome 10, complete
             sequence
          Length = 55835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   taaaggttgcttctgccaga 189
             ||||||||||||||||||||
Sbjct: 27805 taaaggttgcttctgccaga 27786



to top

>gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete sequence
          Length = 169741

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 333    caagaattacagaaaggcacccat 356
              ||||||||| ||||||||||||||
Sbjct: 108467 caagaattagagaaaggcacccat 108490



to top

>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
             complete sequence
          Length = 143879

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ttagatgctgaaacaacaag 124
             ||||||||||||||||||||
Sbjct: 14991 ttagatgctgaaacaacaag 15010



to top

>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I,
             complete sequence
          Length = 99231

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ttagatgctgaaacaacaag 124
             ||||||||||||||||||||
Sbjct: 40124 ttagatgctgaaacaacaag 40105



to top

>gb|AC091681.44| Mus musculus strain C57BL/6J chromosome 10 clone rp23-111d4, complete
             sequence
          Length = 194809

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aatttttgtctgactgaaca 56
             ||||||||||||||||||||
Sbjct: 65635 aatttttgtctgactgaaca 65654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,245,616
Number of Sequences: 3902068
Number of extensions: 3245616
Number of successful extensions: 64184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64164
Number of HSP's gapped (non-prelim): 20
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top