>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +3

Query: 210  PMGSIAPSKNLPNAIVSSAKSAHNTTYKEQTPPQFSP 320
            PMG   PSKNL  A +SS +S H     EQ   +FSP
Sbjct: 3332 PMGPKHPSKNLAPAAISSKRSKHRKQGMEQKISKFSP 3368

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 210  PMGSIAPSKNLPNAIVSSAKSAHNTTYKEQTPPQFSP 320
            PMG   PSK+L  A +SS +S H     EQ   +FSP
Sbjct: 3346 PMGPKHPSKSLAPAAISSKRSKHRKQGMEQKISKFSP 3382

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 210  PMGSIAPSKNLPNAIVSSAKSAHNTTYKEQTPPQFSP 320
            PMG   PSK+L  A +SS +S H     EQ   +FSP
Sbjct: 3337 PMGPKHPSKSLAPAAISSKRSKHRKQGMEQKISKFSP 3373

>CCNE_CAEEL (O01501) G1/S-specific cyclin-E|
          Length = 524

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 228 PSKNLPNAIVSSAKSAHNTTYKEQTPPQ--FSPQHDGDKHRDGHR 356
           P +N  N+ V S KS  + T K ++  +   + +H G+KHR+G R
Sbjct: 48  PQRNTRNSSVGSQKSDCSETRKRRSTKEGPAAKRHSGEKHRNGSR 92

>NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
            dehydrogenase subunit 5)
          Length = 1849

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = +3

Query: 33   YLVQRSFYITIFLCF-LLGVLAAIS----FYITIFLCVPLGCVGCYLFVPFVL----YLS 185
            Y VQ +    +F    L G+L  IS    F IT+ +C  L  + C + +P++L     LS
Sbjct: 1066 YSVQNTLLTVVFYILNLCGILNEISIQILFEITVQICTILATIYCTVVLPYILIILEILS 1125

Query: 186  YL 191
            YL
Sbjct: 1126 YL 1127

>NU1M_LEITA (P15576) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 313

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 51  FYITIFLCFLLGVLAAISFYITIFLCVPLGC-------VGCYLFVPFVLYLS 185
           FY  I    LL       F +T+ LCV + C       VGC+LF    +YLS
Sbjct: 90  FYFPIGFILLLDT----GFTLTVMLCVHVFCSMFSTFFVGCFLFSSCFVYLS 137

>TSGA_BUCBP (Q89A60) Protein tsgA homolog|
          Length = 388

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 40  YREAFTLQSFFVSSWVCWLLSLFTLQSFFVFLLGVLAAISL 162
           +  A  L S F+SSW+  +++L T Q  F F+L ++A + L
Sbjct: 52  FLNAGILSSIFISSWITNIINLKT-QLIFGFILTIIATLIL 91

>MRAY_XANOR (Q5GW39) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 33  YLVQRSFYIT--IFLCFLLGVLAAISFYITIFLCVPLGCVG 149
           YL+Q  F +   +FL +   V AAI+FYI +F  + L  VG
Sbjct: 134 YLLQSIFGLAAGLFLYYTADVPAAITFYIPMFKSIALPLVG 174

>MRAY_XANOM (Q2NZB6) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 33  YLVQRSFYIT--IFLCFLLGVLAAISFYITIFLCVPLGCVG 149
           YL+Q  F +   +FL +   V AAI+FYI +F  + L  VG
Sbjct: 134 YLLQSIFGLAAGLFLYYTADVPAAITFYIPMFKSIALPLVG 174

>SRA24_CAEEL (O62368) Serpentine receptor class alpha-24 (Protein sra-24)|
          Length = 339

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 24  SCH---YLVQRSFYITIFLCFLLGVLAAISFYITIFLCVPLG 140
           SC+   Y +   +Y++IFL F+  +    ++Y+ ++   PLG
Sbjct: 137 SCYTPKYYLSHQYYVSIFLLFIQLIFTLGTYYVGLYGVPPLG 178

>UT14C_HUMAN (Q5TAP6) U3 small nucleolar RNA-associated protein 14 homolog C|
          Length = 766

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 210 PMGSIAPSKNLPNAIVSSAKSAHNTTYKEQTPP 308
           P G     KNLPN I+S  ++ H   ++ Q  P
Sbjct: 653 PEGPPRKDKNLPNVIISEKRNIHAAAHQVQVLP 685

>QCRB_MYCTU (P63885) Ubiquinol-cytochrome c reductase cytochrome b subunit|
          Length = 549

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +3

Query: 48  SFYITIFLCFLLGVLAAISFYITIFLCVPLGCVGCYLFVPFVLYLSY 188
           +FY+ + L  +  ++A + F+I++     +G +G  +  PFV +++Y
Sbjct: 387 AFYMVLTLAAMNDIIA-LKFHISLNATTWIGRIGMVILPPFVYFITY 432

>QCRB_MYCBO (P63886) Ubiquinol-cytochrome c reductase cytochrome b subunit|
          Length = 549

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +3

Query: 48  SFYITIFLCFLLGVLAAISFYITIFLCVPLGCVGCYLFVPFVLYLSY 188
           +FY+ + L  +  ++A + F+I++     +G +G  +  PFV +++Y
Sbjct: 387 AFYMVLTLAAMNDIIA-LKFHISLNATTWIGRIGMVILPPFVYFITY 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,147,265
Number of Sequences: 219361
Number of extensions: 1133147
Number of successful extensions: 3718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3712
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)