Clone Name | rbastl28g12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC005393.1|AC005393 Homo sapiens chromosome 19, CIT-HSP BAC 470n8, complete sequence Length = 123814 Score = 46.1 bits (23), Expect = 0.091 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 tttctttgtttcctcttgggtgt 88 ||||||||||||||||||||||| Sbjct: 32570 tttctttgtttcctcttgggtgt 32592
>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence Length = 206234 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 aaacaccaccacagttcagtcctca 322 |||||||||||||||||||| |||| Sbjct: 69746 aaacaccaccacagttcagttctca 69722
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aatctttctttgtttcctctt 82 ||||||||||||||||||||| Sbjct: 23400480 aatctttctttgtttcctctt 23400460
>gb|AC123847.4| Mus musculus BAC clone RP23-443O1 from chromosome 3, complete sequence Length = 189689 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 tatctctttgtaccctttgtcttgt 177 ||||||||||||||| ||||||||| Sbjct: 171021 tatctctttgtaccccttgtcttgt 170997
>gb|AC123041.2| Mus musculus BAC clone RP24-545E4 from 3, complete sequence Length = 191533 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 tatctctttgtaccctttgtcttgt 177 ||||||||||||||| ||||||||| Sbjct: 72917 tatctctttgtaccccttgtcttgt 72893
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aatctttctttgtttcctctt 82 ||||||||||||||||||||| Sbjct: 23393508 aatctttctttgtttcctctt 23393488
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aatctttctttgtttcctctt 82 ||||||||||||||||||||| Sbjct: 83136 aatctttctttgtttcctctt 83116
>gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, complete sequence Length = 208801 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 aaacaccaccacagttcagtcctca 322 |||||||||||||||||||| |||| Sbjct: 174183 aaacaccaccacagttcagttctca 174159
>emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 in linkage group 18, complete sequence Length = 138757 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 cataatacaacatacaaagag 296 ||||||||||||||||||||| Sbjct: 101305 cataatacaacatacaaagag 101285
>ref|NM_115188.3| Arabidopsis thaliana CYP71B5 (CYTOCHROME P450 71B5); heme binding / iron ion binding / monooxygenase/ oxygen binding AT3G53280 (CYP71B5) mRNA, complete cds Length = 1681 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 52 atctttctttgtttcctctt 71
>gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome y, complete sequence Length = 166756 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 97348 tcctcttgggtgtgttggct 97367 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 97348 tcctcttgggtgtgttggct 97367
>gb|AC139318.5| Mus musculus BAC clone RP24-498K8 from chromosome Y, complete sequence Length = 194810 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 58196 tcctcttgggtgtgttggct 58177 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 58196 tcctcttgggtgtgttggct 58177
>gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome 12, complete sequence Length = 209276 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 caatctttctttgtttcctcttgg 84 ||||||||||||||||||| |||| Sbjct: 193016 caatctttctttgtttccttttgg 192993
>gb|AC116570.3| Mus musculus BAC clone RP23-93O1 from chromosome 1, complete sequence Length = 213410 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tatctctttttacattacaa 117 |||||||||||||||||||| Sbjct: 161830 tatctctttttacattacaa 161811
>gb|AC133080.3| Mus musculus BAC clone RP24-280M20 from chromosome 12, complete sequence Length = 159903 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 caatctttctttgtttcctcttgg 84 ||||||||||||||||||| |||| Sbjct: 128810 caatctttctttgtttccttttgg 128833
>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence Length = 209459 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 tctttctttgtttcctcttgggtgtgtt 91 ||||||||||||||||| ||||| |||| Sbjct: 16582 tctttctttgtttcctcctgggtctgtt 16609
>gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete sequence Length = 127163 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgtaccctttgtcttgtat 179 |||||||||||||||||||| Sbjct: 10294 ttgtaccctttgtcttgtat 10313
>gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174576 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aaagagcaaacaccaccaca 310 |||||||||||||||||||| Sbjct: 65946 aaagagcaaacaccaccaca 65965
>emb|Y09907.1|BMMERAR2 Bacillus megaterium ORF2, ORF3, ORF4, merR and merA genes Length = 3996 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 1211 atctttctttgtttcctctt 1192
>emb|X99457.1|ESPMER Exiguobacterium sp. plasmid mer operon Length = 4006 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 1222 atctttctttgtttcctctt 1203
>gb|AC166343.1| Mus musculus BAC clone RP23-470N9 from chromosome 9, complete sequence Length = 191957 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 2234 tcctcttgggtgtgttggct 2253 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 2234 tcctcttgggtgtgttggct 2253
>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2 Length = 92611 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 79823 atctttctttgtttcctctt 79842
>gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosome y, complete sequence Length = 166980 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 692 tcctcttgggtgtgttggct 711 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 692 tcctcttgggtgtgttggct 711
>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence Length = 164220 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 aattttcatgtcattatctagtac 42 ||||| |||||||||||||||||| Sbjct: 51747 aatttgcatgtcattatctagtac 51724
>gb|AC021504.5|AC021504 Homo sapiens chromosome 18, clone RP11-164M8, complete sequence Length = 177068 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 aattttcatgtcattatctagtac 42 ||||| |||||||||||||||||| Sbjct: 170756 aatttgcatgtcattatctagtac 170733
>emb|BX823840.1|CNS0A7DG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS81ZE12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1732 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 52 atctttctttgtttcctctt 71
>gb|AC093675.4| Homo sapiens BAC clone RP11-592G13 from 2, complete sequence Length = 123182 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tatttataatgaaaatggttcagg 209 ||||||||||||||||| |||||| Sbjct: 107342 tatttataatgaaaatgtttcagg 107365
>gb|AC093388.4| Homo sapiens BAC clone RP11-647K16 from 2, complete sequence Length = 111996 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cagagaagcttttacattac 61 |||||||||||||||||||| Sbjct: 88136 cagagaagcttttacattac 88155
>gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Systems Mouse BAC Library) complete sequence Length = 157665 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 20099 tcctcttgggtgtgttggct 20118 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 20099 tcctcttgggtgtgttggct 20118
>gb|AC069451.11|AC069451 Mus musculus BAC MGS3-404F4 (Genome Systems Mouse BAC Library) complete sequence Length = 122914 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 69524 tcctcttgggtgtgttggct 69543 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 69524 tcctcttgggtgtgttggct 69543
>gb|AC133462.18| Mus musculus chromosome 1, clone RP24-441D8, complete sequence Length = 140132 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tatctctttttacattacaa 117 |||||||||||||||||||| Sbjct: 89726 tatctctttttacattacaa 89745
>dbj|D78601.1| Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete cds, clone P450-12 Length = 1633 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 16 atctttctttgtttcctctt 35
>gb|AF138877.1|AF138877 Bacillus sp. RC607 mercury resistance operon, complete sequence Length = 7029 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 1464 atctttctttgtttcctctt 1445
>emb|BX276177.6| Zebrafish DNA sequence from clone CH211-223M11 in linkage group 20, complete sequence Length = 202340 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 gaaagatgaactgatgataatttt 24 |||| ||||||||||||||||||| Sbjct: 76483 gaaaaatgaactgatgataatttt 76460
>dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832A4, complete sequence Length = 215441 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 taatgaaaatggttcaggcc 211 |||||||||||||||||||| Sbjct: 38869 taatgaaaatggttcaggcc 38850
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 tttgtttcctcttgggtgtgttgg 93 ||||||||||||||||||| |||| Sbjct: 12299 tttgtttcctcttgggtgtcttgg 12322
>gb|AC172368.1| Mus musculus BAC clone RP23-170F12 from chromosome 9, complete sequence Length = 231123 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcctcttgggtgtgttggct 95 |||||||||||||||||||| Sbjct: 142970 tcctcttgggtgtgttggct 142989 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcctcttgggtgtgttggct 150 |||||||||||||||||||| Sbjct: 142970 tcctcttgggtgtgttggct 142989
>emb|AL731682.20| Mouse DNA sequence from clone RP23-123F7 on chromosome 2, complete sequence Length = 201290 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 agcaaaagagctctcaggtcaacc 409 ||||||||||||||||| |||||| Sbjct: 22573 agcaaaagagctctcagttcaacc 22550
>dbj|AB066362.1| Bacillus cereus transposon Tn5084 DNA, mercury resistance operon, complete and partial cds, strain:RC607 Length = 11505 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 5495 atctttctttgtttcctctt 5476
>dbj|AB024961.1| Clostridium butyricum merR1, merE-like, merT, merP, merA, merR2, merB2, merB1 genes, complete cds Length = 6161 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atctttctttgtttcctctt 82 |||||||||||||||||||| Sbjct: 787 atctttctttgtttcctctt 768 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,784,872 Number of Sequences: 3902068 Number of extensions: 4784872 Number of successful extensions: 100067 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99929 Number of HSP's gapped (non-prelim): 138 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)