ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-) 30 1.4
2GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 29 2.4
3NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R) 28 6.9
4EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Kro... 27 9.0
5COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4) 27 9.0

>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)|
          Length = 758

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 102 SSKDVTFSTHLIHIQISLRSKDTTSSAPTCP 194
           SSK  + S+HL H+  +  S +T + A TCP
Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175



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>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 259 CN*LQSCLVARMDRHATCTHSGGHVGAELVVSFDLKLICICI 134
           CN  +S LV   D     TH+G  +G     SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



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>NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R)|
          Length = 371

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 131 VCTESYIFRTDTALSFTSTVCLAFFVDLRSLIFCGVYVSSC 9
           VC E +  +T+  L  TS + L +FV L  +  C + +  C
Sbjct: 195 VCVEHWPSKTNQLLYSTSLIMLQYFVPLGFMFICYLKIVIC 235



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>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 138 HIQISLRSKDTTSSAPTCPP 197
           H +I LR K+  SSAP+ PP
Sbjct: 413 HTKIHLRQKERKSSAPSAPP 432



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>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)|
          Length = 77

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 QSCLVARMDRHATCTHSGGHVG 182
           Q   +A  DRH TC H G H G
Sbjct: 26  QKXFLAACDRHDTCYHCGKHFG 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,646,454
Number of Sequences: 219361
Number of extensions: 1277560
Number of successful extensions: 3240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3240
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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