Clone Name | rbastl28g08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF306827.1|AF306827 Triticum monococcum subsp. monococcum clone 437 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 29 ttgaactgcaaaaacatgttaaatttaggaacagatggtgta 70 ||||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 729 ttgaactgcaaaaacgtcttatatttaggaacagagggtgta 770 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 28 tttgaactgcaaaaacatgttaaatttaggaacaga 63 |||||||||||||||| | ||| |||||| |||||| Sbjct: 728 tttgaactgcaaaaacgtcttatatttagaaacaga 693
>gb|AF306829.1|AF306829 Triticum urartu clone 581 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Plus Query: 28 tttgaactgcaaaaacatgttaaatttaggaacagatggtgta 70 |||||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 728 tttgaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|AF306828.1|AF306828 Triticum turgidum subsp. dicoccoides clone 465 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1836 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Plus Query: 28 tttgaactgcaaaaacatgttaaatttaggaacagatggtgta 70 |||||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 728 tttgaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|AF306824.1|AF306824 Triticum timopheevii subsp. armeniacum clone 453 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Plus Query: 28 tttgaactgcaaaaacatgttaaatttaggaacagatggtgta 70 |||||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 728 tttgaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|DQ400416.1| Triticum aestivum starch synthase IV (SSIV) gene, complete cds Length = 7137 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 26 ggtttgaactgcaaaaacatgttaaatttaggaacagatggtgtacaaga 75 ||||| |||||| ||||| | ||| ||||||||||||| |||||| |||| Sbjct: 2850 ggtttaaactgccaaaacgtcttacatttaggaacagagggtgtagaaga 2801
>emb|AL359375.16| Human DNA sequence from clone RP11-93K18 on chromosome 10, complete sequence Length = 126846 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 actgcaaaaacatgttaaatt 53 ||||||||||||||||||||| Sbjct: 113496 actgcaaaaacatgttaaatt 113516
>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12 Contains the 3' end of the gene for sister-of-mammalian grainyhead (SOM), a novel gene (LOC90529) and a novel gene (DJ462O23.2), complete sequence Length = 154154 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 cttcagtcttttttaacctgc 115 ||||||||||||||||||||| Sbjct: 30026 cttcagtcttttttaacctgc 30006
>gb|AC158581.2| Mus musculus chromosome 3, clone RP24-264G1, complete sequence Length = 166808 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 tgctgagacatccatcatcca 327 ||||||||||||||||||||| Sbjct: 107588 tgctgagacatccatcatcca 107608
>gb|AC079269.8| Homo sapiens chromosome 10 clone RP11-379L21, complete sequence Length = 196004 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 actgcaaaaacatgttaaatt 53 ||||||||||||||||||||| Sbjct: 92826 actgcaaaaacatgttaaatt 92846
>gb|AC102278.10| Mus musculus chromosome 3, clone RP24-298A6, complete sequence Length = 184908 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 tgctgagacatccatcatcca 327 ||||||||||||||||||||| Sbjct: 11976 tgctgagacatccatcatcca 11956
>gb|AC144948.3| Mus musculus BAC clone RP23-119D7 from chromosome 6, complete sequence Length = 213811 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 gaactgcaaaaacatgttaaattt 54 |||||||||| ||||||||||||| Sbjct: 84569 gaactgcaaagacatgttaaattt 84546
>gb|BC092191.1| Rattus norvegicus cDNA clone IMAGE:7111416, **** WARNING: chimeric clone **** Length = 4570 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 ttcgttcctcacctccagctccat 154 |||||||||| ||||||||||||| Sbjct: 3089 ttcgttcctctcctccagctccat 3112
>gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, complete sequence Length = 197616 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 acatcttacatttaggtttg 31 |||||||||||||||||||| Sbjct: 30141 acatcttacatttaggtttg 30160
>gb|AF271405.5| Homo sapiens chromosome 8 clone SCb-554J4 map p21-p11, complete sequence Length = 109761 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 acatcttacatttaggtttg 31 |||||||||||||||||||| Sbjct: 82406 acatcttacatttaggtttg 82425
>gb|AF217759.5| Homo sapiens chromosome 8 clone GS1-45G16 map p21-p11, complete sequence Length = 83359 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 acatcttacatttaggtttg 31 |||||||||||||||||||| Sbjct: 56748 acatcttacatttaggtttg 56767
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 catcatccatgacacatttt 338 |||||||||||||||||||| Sbjct: 1431210 catcatccatgacacatttt 1431229
>emb|BX927372.14| Zebrafish DNA sequence from clone CH211-241H14 in linkage group 13, complete sequence Length = 138336 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 accaaacacaatgaatcagatcac 259 ||||||||||||||| |||||||| Sbjct: 18801 accaaacacaatgaaccagatcac 18778
>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence Length = 111147 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 atttaggtttgaactgcaaaaaca 44 |||| ||||||||||||||||||| Sbjct: 99839 attttggtttgaactgcaaaaaca 99816
>gb|AC104997.4| Homo sapiens chromosome 8, clone RP11-1149M3, complete sequence Length = 144859 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 acatcttacatttaggtttg 31 |||||||||||||||||||| Sbjct: 35448 acatcttacatttaggtttg 35429
>gb|AC062039.3| Homo sapiens BAC clone RP11-814A15 from 2, complete sequence Length = 141040 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 aacatgttaaatttaggaacagat 64 ||||||||||||||||||| |||| Sbjct: 55230 aacatgttaaatttaggaatagat 55207
>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete sequence Length = 278040 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 accaaacacaatgaatcagatcac 259 ||||||||||||||| |||||||| Sbjct: 242072 accaaacacaatgaaccagatcac 242049
>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence Length = 184473 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 catggaaccatccaaaccca 231 |||||||||||||||||||| Sbjct: 152795 catggaaccatccaaaccca 152814
>gb|BC087131.1| Rattus norvegicus glutamate-ammonia ligase (glutamine synthase), mRNA (cDNA clone MGC:94942 IMAGE:7112880), complete cds Length = 4157 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ttcgttcctcacctccagctccat 154 |||||||||| ||||||||||||| Sbjct: 2805 ttcgttcctctcctccagctccat 2782
>ref|NM_017073.2| Rattus norvegicus glutamate-ammonia ligase (glutamine synthase) (Glul), mRNA Length = 4157 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ttcgttcctcacctccagctccat 154 |||||||||| ||||||||||||| Sbjct: 2805 ttcgttcctctcctccagctccat 2782
>emb|X92074.1|RNGLUSYNI R.norvegicus glutamine synthetase intron 1 Length = 1938 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ttcgttcctcacctccagctccat 154 |||||||||| ||||||||||||| Sbjct: 1013 ttcgttcctctcctccagctccat 990 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,398,640 Number of Sequences: 3902068 Number of extensions: 4398640 Number of successful extensions: 106400 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106330 Number of HSP's gapped (non-prelim): 70 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)