ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009369.1| Triticum aestivum clone wlm96.pk028.e8:fis, full insert mRNA sequence Length = 1328 Score = 410 bits (207), Expect = e-111 Identities = 302/331 (91%), Gaps = 2/331 (0%) Strand = Plus / Minus Query: 11 ttcagctttatccttcaaaacatgtgaagttaccgtgcgagtattagtagcaccaacacc 70 |||||| || ||||||| || |||| ||||||||||||| |||| ||||||||||||||| Sbjct: 1116 ttcagccttttccttcagaaaatgtaaagttaccgtgcgcgtatcagtagcaccaacacc 1057 Query: 71 gtggtagatc-gagagtacttcacatcacatctaccagtaatttttcggcattatcgacg 129 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 gtggcagatccgagagcacttcacatcacatctaccagtaatttttcggcattatcgacg 997 Query: 130 gccagactcattcaggaagcctcaacggcatggaagaatgc-ctggaggatctactcgtt 188 |||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 996 gccagactcactcaagaagcctcaacggcatggaagaatttgctggaggatctattcgtt 937 Query: 189 ggctatgtatgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgat 248 ||||| | ||||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct: 936 ggctacgcgtgcgtcgctctgatcgtgtactccgccacaagctttgagaacagagacgac 877 Query: 249 ttgttctccagcagcttggctggcgtgtcacgctccacggccacaccgttgtcgaggagc 308 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 876 ttgttctccagcagcttggccggcgtgtcacgctccacggccacaccgttgtcgaggagc 817 Query: 309 aagaccatgtcgctgtcaaggaccgaggtga 339 | |||||||||||||| ||||||||||||| Sbjct: 816 agaaccatgtcgctgtcgaggaccgaggtga 786
>ref|NM_191586.2| Oryza sativa (japonica cultivar-group), mRNA Length = 5018 Score = 178 bits (90), Expect = 8e-42 Identities = 129/142 (90%) Strand = Plus / Minus Query: 198 tgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctcc 257 ||||||| |||||||||||| || ||||||||||| |||||||||||||| |||| |||| Sbjct: 4544 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagagagacgacttgtcctcc 4485 Query: 258 agcagcttggctggcgtgtcacgctccacggccacaccgttgtcgaggagcaagaccatg 317 || ||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 4484 agtagcctggtcggcgtgtcgcgctccacggccacaccgttgtcaaggagcaagaccatg 4425 Query: 318 tcgctgtcaaggaccgaggtga 339 |||||||||||||| ||||||| Sbjct: 4424 tcgctgtcaaggacggaggtga 4403 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 atttttcggcattatcgacg 129 |||||||||||||||||||| Sbjct: 4625 atttttcggcattatcgacg 4606
>dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full insert sequence Length = 5017 Score = 178 bits (90), Expect = 8e-42 Identities = 129/142 (90%) Strand = Plus / Minus Query: 198 tgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctcc 257 ||||||| |||||||||||| || ||||||||||| |||||||||||||| |||| |||| Sbjct: 4543 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagagagacgacttgtcctcc 4484 Query: 258 agcagcttggctggcgtgtcacgctccacggccacaccgttgtcgaggagcaagaccatg 317 || ||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 4483 agtagcctggtcggcgtgtcgcgctccacggccacaccgttgtcaaggagcaagaccatg 4424 Query: 318 tcgctgtcaaggaccgaggtga 339 |||||||||||||| ||||||| Sbjct: 4423 tcgctgtcaaggacggaggtga 4402 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 atttttcggcattatcgacg 129 |||||||||||||||||||| Sbjct: 4624 atttttcggcattatcgacg 4605
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 2e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 198 tgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctcc 257 ||||||| |||||||||||| || ||||||||||| |||||||||||||| |||| |||| Sbjct: 3809246 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagagagacgacttgtcctcc 3809187 Query: 258 agcagcttggctggcgtgtcacgctccacggccacacc 295 || ||| ||| |||||||| ||||||||||||||||| Sbjct: 3809186 agtagcctggtcggcgtgtcgcgctccacggccacacc 3809149 Score = 79.8 bits (40), Expect = 5e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 292 caccgttgtcgaggagcaagaccatgtcgctgtcaaggaccgaggtga 339 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 3808977 caccgttgtcaaggagcaagaccatgtcgctgtcaaggacggaggtga 3808930 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 atttttcggcattatcgacg 129 |||||||||||||||||||| Sbjct: 3809327 atttttcggcattatcgacg 3809308
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 107 bits (54), Expect = 2e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 198 tgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctcc 257 ||||||| |||||||||||| || ||||||||||| |||||||||||||| |||| |||| Sbjct: 82788 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagagagacgacttgtcctcc 82729 Query: 258 agcagcttggctggcgtgtcacgctccacggccacacc 295 || ||| ||| |||||||| ||||||||||||||||| Sbjct: 82728 agtagcctggtcggcgtgtcgcgctccacggccacacc 82691 Score = 79.8 bits (40), Expect = 5e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 292 caccgttgtcgaggagcaagaccatgtcgctgtcaaggaccgaggtga 339 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 82519 caccgttgtcaaggagcaagaccatgtcgctgtcaaggacggaggtga 82472 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 atttttcggcattatcgacg 129 |||||||||||||||||||| Sbjct: 82869 atttttcggcattatcgacg 82850
>emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) mrp3 gene for MRP-like ABC transporter, exons 1-10 Length = 5514 Score = 107 bits (54), Expect = 2e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 198 tgcgtcgctctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctcc 257 ||||||| |||||||||||| || ||||||||||| |||||||||||||| |||| |||| Sbjct: 5507 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagagagacgacttgtcctcc 5448 Query: 258 agcagcttggctggcgtgtcacgctccacggccacacc 295 || ||| ||| |||||||| ||||||||||||||||| Sbjct: 5447 agtagcctggtcggcgtgtcgcgctccacggccacacc 5410 Score = 79.8 bits (40), Expect = 5e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 292 caccgttgtcgaggagcaagaccatgtcgctgtcaaggaccgaggtga 339 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5238 caccgttgtcaaggagcaagaccatgtcgctgtcaaggacggaggtga 5191
>gb|AF532601.1| Triticum aestivum multidrug resistance associated protein MRP2 mRNA, complete cds Length = 4857 Score = 97.6 bits (49), Expect = 2e-17 Identities = 112/133 (84%) Strand = Plus / Minus Query: 207 ctcatcgtgtactctgctacgagctttgagaagagagacgatttgttctccagcagcttg 266 ||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||| | || Sbjct: 4688 ctcatcgtgtattctgctacaagctttgagaacagagaggatttgtcctccagcaacctg 4629 Query: 267 gctggcgtgtcacgctccacggccacaccgttgtcgaggagcaagaccatgtcgctgtca 326 |||||||| | ||||||| |||| || ||||| ||||||||||| || || || | | Sbjct: 4628 gctggcgtttggtgctccacagccatgccattgtcaaggagcaagactatatcactatga 4569 Query: 327 aggaccgaggtga 339 ||||||||||||| Sbjct: 4568 aggaccgaggtga 4556
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 gttctccagcagcttggctggc 272 |||||||||||||||||||||| Sbjct: 700444 gttctccagcagcttggctggc 700465
>ref|XM_567714.1| Cryptococcus neoformans var. neoformans JEC21 general transcriptional repressor (CNK02410) partial mRNA Length = 3497 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 gttctccagcagcttggctggc 272 |||||||||||||||||||||| Sbjct: 1012 gttctccagcagcttggctggc 1033
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tgtcacgctccacggccacac 294 ||||||||||||||||||||| Sbjct: 1716099 tgtcacgctccacggccacac 1716079
>emb|X05651.1|GMGLY4MU Soybean mutant Gy(4) glycinin gene (null-allele) Length = 3543 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 cacatctaccagtaatttttc 116 ||||||||||||||||||||| Sbjct: 2454 cacatctaccagtaatttttc 2474
>dbj|AB004062.1| Glycine max A5A4B3 glycinin gene, complete cds Length = 3680 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 cacatctaccagtaatttttc 116 ||||||||||||||||||||| Sbjct: 2542 cacatctaccagtaatttttc 2562
>gb|AE007222.1| Sinorhizobium meliloti 1021 plasmid pSymA section 28 of 121 of the complete plasmid sequence Length = 12259 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cattcaggaagcctcaacgg 157 |||||||||||||||||||| Sbjct: 4058 cattcaggaagcctcaacgg 4077
>gb|AC004834.2| Homo sapiens PAC clone RP4-550A13 from 7, complete sequence Length = 79516 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 agcaagaccatgtcgctgtc 325 |||||||||||||||||||| Sbjct: 71627 agcaagaccatgtcgctgtc 71646
>tpg|BK001410.1| TPA: TPA_exp: Homo sapiens myosin heavy chain (MYH16) pseudogene, complete sequence Length = 83303 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 agcaagaccatgtcgctgtc 325 |||||||||||||||||||| Sbjct: 49186 agcaagaccatgtcgctgtc 49167
>emb|AL137079.1|ATT27B3 Arabidopsis thaliana DNA chromosome 3, BAC clone T27B3 Length = 80450 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 cttcacatcacatctaccagtaat 111 ||||||||||| |||||||||||| Sbjct: 53618 cttcacatcacctctaccagtaat 53641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,314,644 Number of Sequences: 3902068 Number of extensions: 2314644 Number of successful extensions: 41506 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41461 Number of HSP's gapped (non-prelim): 43 length of query: 339 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 317 effective length of database: 17,147,199,772 effective search space: 5435662327724 effective search space used: 5435662327724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
