ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full insert mRNA sequence Length = 876 Score = 133 bits (67), Expect = 5e-28 Identities = 115/131 (87%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| Sbjct: 573 tagaagttctccttgtggaactcaaactttgtgttcgtcttgtgggtgaagtctgctgac 514 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| ||||| |||||||| |||||| |||| || |||||||| || || || || Sbjct: 513 cactgccgtagctgtggcacaaggacaggctcaccgcagtagaaaactccaacgcgttgg 454 Query: 392 ttctcatggtt 402 ||||||||||| Sbjct: 453 ttctcatggtt 443
>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase protein B (rbohB) mRNA, complete cds Length = 3334 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 3012 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 2953 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| || || || || || |||||| ||||||| ||||| || ||||| ||||| Sbjct: 2952 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2893 Query: 392 ttctcatggttgaccgc 408 ||||||||| ||||||| Sbjct: 2892 ttctcatggctgaccgc 2876
>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full insert sequence Length = 3255 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 3085 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3026 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| || || || || || |||||| ||||||| ||||| || ||||| ||||| Sbjct: 3025 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2966 Query: 392 ttctcatggttgaccgc 408 ||||||||| ||||||| Sbjct: 2965 ttctcatggctgaccgc 2949
>dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G19, full insert sequence Length = 3731 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 3604 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3545 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| || || || || || |||||| ||||||| ||||| || ||||| ||||| Sbjct: 3544 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 3485 Query: 392 ttctcatggttgaccgc 408 ||||||||| ||||||| Sbjct: 3484 ttctcatggctgaccgc 3468
>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full insert sequence Length = 3198 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 3088 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3029 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| || || || || || |||||| ||||||| ||||| || ||||| ||||| Sbjct: 3028 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2969 Query: 392 ttctcatggttgaccgc 408 ||||||||| ||||||| Sbjct: 2968 ttctcatggctgaccgc 2952
>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full insert sequence Length = 2978 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 2725 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 2666 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccgacacgctga 391 ||||||| || || || || || |||||| ||||||| ||||| || ||||| ||||| Sbjct: 2665 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2606 Query: 392 ttctcatggttgaccgc 408 ||||||||| ||||||| Sbjct: 2605 ttctcatggctgaccgc 2589
>gb|AY107147.1| Zea mays PCO125081 mRNA sequence Length = 938 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 275 aagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgacaac 334 |||||||||||||| ||||| ||||| || ||||||||||||||||| || || |||| | Sbjct: 641 aagttctccttgtggaactcgaacttagtatttgtcttgtgggtgaagtccgctgacagc 582 Query: 335 tgccgcagctgcggcacaagaacaggcccaccacaatagaaaaccccga 383 ||||| ||||| |||||||| || ||| ||||||| |||||||| |||| Sbjct: 581 tgccgtagctgtggcacaaggacgggctcaccacagtagaaaactccga 533
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 14604500 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 14604559 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaa 375 ||||||| || || || || || |||||| ||||||| ||||| Sbjct: 14604560 aactgccttagttggggaaccagcacaggctcaccacagtagaa 14604603
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 85877 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 85936 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaa 375 ||||||| || || || || || |||||| ||||||| ||||| Sbjct: 85937 aactgccttagttggggaaccagcacaggctcaccacagtagaa 85980
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 272 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 331 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| Sbjct: 163813 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 163872 Query: 332 aactgccgcagctgcggcacaagaacaggcccaccacaatagaa 375 ||||||| || || || || || |||||| ||||||| ||||| Sbjct: 163873 aactgccttagttggggaaccagcacaggctcaccacagtagaa 163916
>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA sequence Length = 543 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 271 ctagaagttctccttgtgaaactcaaactttgtgtttgtctt 312 |||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 377 ctagaagttctccttgtggaactcgaacttggtgttggtctt 336
>gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full insert mRNA sequence Length = 1993 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 278 ttctccttgtgaaactcaaactttgtgtttgtctt 312 ||||||||||| ||||| || |||||||||||||| Sbjct: 1750 ttctccttgtggaactcgaattttgtgtttgtctt 1716
>gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome 6, complete sequence Length = 193207 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 aaactttgtgtttgtcttgtgg 316 |||||||||||||||||||||| Sbjct: 40211 aaactttgtgtttgtcttgtgg 40190
>dbj|AK039284.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330015G07 product:unclassifiable, full insert sequence Length = 2201 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 aaactttgtgtttgtcttgtgg 316 |||||||||||||||||||||| Sbjct: 508 aaactttgtgtttgtcttgtgg 487
>dbj|AK043600.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830011K09 product:unclassifiable, full insert sequence Length = 1791 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 aaactttgtgtttgtcttgtgg 316 |||||||||||||||||||||| Sbjct: 718 aaactttgtgtttgtcttgtgg 697
>ref|XM_955172.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 tctgccgacaactgccgcagc 343 ||||||||||||||||||||| Sbjct: 346 tctgccgacaactgccgcagc 366
>ref|XM_327389.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 tctgccgacaactgccgcagc 343 ||||||||||||||||||||| Sbjct: 346 tctgccgacaactgccgcagc 366
>gb|AC183550.3| Pan troglodytes BAC clone CH251-48C10 from chromosome 7, complete sequence Length = 163417 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 cattttatttcccacctttac 197 ||||||||||||||||||||| Sbjct: 52451 cattttatttcccacctttac 52431
>emb|BX842589.1| Chimp DNA sequence from clone bCH-61P22, complete sequence Length = 201637 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 96215 atacaaggaaaggaagcatag 96195
>ref|XM_720557.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05218) partial mRNA Length = 1872 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ctttacaaaataataatacaa 212 ||||||||||||||||||||| Sbjct: 449 ctttacaaaataataatacaa 469
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence Length = 117113 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 tttacaaaataataatacaac 213 ||||||||||||||||||||| Sbjct: 35316 tttacaaaataataatacaac 35296
>gb|AY320039.1| Homo sapiens KIR_wt47 long haplotype gene, complete sequence Length = 218963 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 118962 atacaaggaaaggaagcatag 118942
>emb|AL133414.4| Human DNA sequence from clone RP5-1060P11 on chromosome 19. Contains ESTs, STSs and GSSs. Contains 10 natural killer cell receptors, including the KIR2DL2, KIR2DL4, KIR2DS1 and KIR2DS2 genes for killer cell two domain long cytoplasmic tail immunoglobulin-like receptor 2 and 4 and and short cytoplasmic tail immunoglobulin-like receptor 1 and 2 and the KIR3DL2 and KIR3DS1 genes for killer cell three domain short cytoplasmic tail immunoglobulin-like receptor 2 and short cytoplasmic tail immunoglobulin-like receptor 1, complete sequence Length = 159169 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 50011 atacaaggaaaggaagcatag 49991
>gb|AC155174.2| Pan troglodytes BAC clone CH251-396C20 from chromosome unknown, complete sequence Length = 185465 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 63446 atacaaggaaaggaagcatag 63466
>gb|AC158241.3| Pan troglodytes BAC clone CH251-351I22 from chromosome unknown, complete sequence Length = 218497 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 60531 atacaaggaaaggaagcatag 60511
>gb|AC100856.3| Homo sapiens chromosome 8, clone RP11-1001A23, complete sequence Length = 182933 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 ttaacaacatagagtaaacaa 145 ||||||||||||||||||||| Sbjct: 101357 ttaacaacatagagtaaacaa 101337
>gb|AC011501.8| Homo sapiens chromosome 19 clone CTB-61M7, complete sequence Length = 161218 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atacaaggaaaggaagcatag 85 ||||||||||||||||||||| Sbjct: 47580 atacaaggaaaggaagcatag 47560
>gb|AC006777.1| Caenorhabditis elegans cosmid Y46H3D, complete sequence Length = 27089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ggcaaaaccactcccatttt 182 |||||||||||||||||||| Sbjct: 19971 ggcaaaaccactcccatttt 19990
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attttatttcccacctttac 197 |||||||||||||||||||| Sbjct: 130982 attttatttcccacctttac 130963
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attttatttcccacctttac 197 |||||||||||||||||||| Sbjct: 156975 attttatttcccacctttac 156956
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tttacaaaataataatacaa 212 |||||||||||||||||||| Sbjct: 534673 tttacaaaataataatacaa 534654
>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence Length = 208880 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 actcaaactttgtgtttgtcttgt 314 ||||||| |||||||||||||||| Sbjct: 64986 actcaaattttgtgtttgtcttgt 64963
>gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, complete sequence Length = 161524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 aatacaacccatacaattca 225 |||||||||||||||||||| Sbjct: 8205 aatacaacccatacaattca 8224
>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence Length = 186062 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 atactccttaacaacataga 137 |||||||||||||||||||| Sbjct: 98600 atactccttaacaacataga 98581
>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence Length = 232473 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 ggcccaccacaatagaaaaccccg 382 ||||||||||||||| |||||||| Sbjct: 65858 ggcccaccacaatagcaaaccccg 65881
>gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-319E8, complete sequence Length = 153773 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tcccacctttacaaaataataata 209 |||||||| ||||||||||||||| Sbjct: 143029 tcccacctatacaaaataataata 143052
>ref|XM_721982.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06423) partial mRNA Length = 4384 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 atagacatattcttatacaa 261 |||||||||||||||||||| Sbjct: 3131 atagacatattcttatacaa 3150
>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence Length = 135248 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tgaagcatggcatagacata 250 |||||||||||||||||||| Sbjct: 73693 tgaagcatggcatagacata 73674
>gb|AC117452.2| Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193285 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aattcacctgatgaagcatg 239 |||||||||||||||||||| Sbjct: 142279 aattcacctgatgaagcatg 142260
>gb|AC119729.5| Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125847 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aattcacctgatgaagcatg 239 |||||||||||||||||||| Sbjct: 1357 aattcacctgatgaagcatg 1338
>gb|DQ378286.1| Drosophila virilis strain Tucson 15010-1001.10 fosmids 22L1 and 42E12, complete sequence Length = 68774 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aaaaccccgacacgctgatt 393 |||||||||||||||||||| Sbjct: 2488 aaaaccccgacacgctgatt 2507
>gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, complete sequence Length = 74705 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 aatacaacccatacaattca 225 |||||||||||||||||||| Sbjct: 18762 aatacaacccatacaattca 18743
>gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complete sequence Length = 169483 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cacctttacaaaataataat 208 |||||||||||||||||||| Sbjct: 144467 cacctttacaaaataataat 144448
>gb|AC008835.6| Homo sapiens chromosome 5 clone CTD-2148E3, complete sequence Length = 129046 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 aatacaacccatacaattca 225 |||||||||||||||||||| Sbjct: 116603 aatacaacccatacaattca 116584
>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence Length = 199337 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 actcaaactttgtgtttgtcttgt 314 ||||||| |||||||||||||||| Sbjct: 73105 actcaaattttgtgtttgtcttgt 73128
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attttatttcccacctttac 197 |||||||||||||||||||| Sbjct: 17402200 attttatttcccacctttac 17402181
>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence Length = 145918 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 tcccacctttacaaaataataata 209 |||||||| ||||||||||||||| Sbjct: 108062 tcccacctatacaaaataataata 108039
>gb|AC079444.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-395k5, complete sequence Length = 171451 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 ggcccaccacaatagaaaaccccg 382 ||||||||||||||| |||||||| Sbjct: 46007 ggcccaccacaatagcaaaccccg 45984
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attttatttcccacctttac 197 |||||||||||||||||||| Sbjct: 17495910 attttatttcccacctttac 17495891
>dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342a, complete sequence Length = 57652 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tagaagttctccttgtgaaa 291 |||||||||||||||||||| Sbjct: 34235 tagaagttctccttgtgaaa 34216 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,613,434 Number of Sequences: 3902068 Number of extensions: 4613434 Number of successful extensions: 88607 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88411 Number of HSP's gapped (non-prelim): 196 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
