ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478222.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2ref|XM_506351.1| PREDICTED Oryza sativa (japonica cultivar-group... 82 2e-12
3gb|AY224569.1| Oryza sativa (japonica cultivar-group) isolate 29... 82 2e-12
4dbj|AB078881.1| Oryza sativa CRTintP mRNA for calreticulin inter... 82 2e-12
5dbj|AK065220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
7dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
8gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq... 50 0.006
9gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete seq... 50 0.006
10gb|DQ139901.1| Trimorphodon biscutatus CRISP-TRI1 mRNA, partial cds 44 0.37
11gb|DQ139900.1| Telescopus dhara CRISP-TEL1 mRNA, partial cds 44 0.37
12gb|DQ139890.1| Dispholidus typus CRISP-DIS2 mRNA, complete cds 44 0.37
13gb|DQ139889.1| Dispholidus typus CRISP-DIS1 mRNA, complete cds 44 0.37
14gb|AY261467.1| Trimeresurus jerdonii cysteine-rich venom protein... 42 1.5
15gb|AY423708.1| Trimeresurus stejnegeri cysteine-rich secretory p... 42 1.5
16gb|AF384219.1| Trimeresurus flavoviridis triflin mRNA, complete cds 42 1.5
17gb|AF384218.1| Agkistrodon blomhoffi ablomin mRNA, complete cds 42 1.5
18gb|AY181983.1| Crotalus atrox catrin mRNA, complete cds 42 1.5
19gb|AY181982.1| Agkistrodon piscivorus piscivorus piscivorin mRNA... 42 1.5
20emb|AL935288.9| Zebrafish DNA sequence from clone CH211-250C4, c... 42 1.5
21gb|U59447.1|PMU59447 Trimeresurus mucrosquamatus prepro-cysteine... 42 1.5
22gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosom... 40 5.8
23gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, com... 40 5.8
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
25ref|XM_386428.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 5.8
26gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
27gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosom... 40 5.8
28gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complet... 40 5.8
29gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, com... 40 5.8
30emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chro... 40 5.8
31emb|AL162738.12| Human DNA sequence from clone RP5-1110L4 on chr... 40 5.8
32emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chro... 40 5.8
33emb|AL121915.8|HSJ1193N1 Human DNA sequence from clone RP5-1193N... 40 5.8
34gb|AY299475.1| Ophiophagus hannah opharin precursor, mRNA, compl... 40 5.8
35emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephal... 40 5.8
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
37gb|AY181984.1| Ophiophagus hannah ophanin mRNA, complete cds 40 5.8
38gb|DQ139898.1| Philodryas olfersii CRISP-PHI2 mRNA, partial cds 40 5.8
39gb|DQ139897.1| Philodryas olfersii CRISP-PHI1 mRNA, partial cds 40 5.8
40gb|DQ139895.1| Liophis poecilogyrus CRISP-LIO1 mRNA, partial cds 40 5.8
41gb|DQ139894.1| Leioheterodon madagascariensis CRISP-LEI1 mRNA, p... 40 5.8
42gb|DQ139891.1| Dispholidus typus CRISP-DIS3 mRNA, complete cds 40 5.8
43gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosom... 40 5.8
44dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
45dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
47dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
48dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
49gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, comple... 40 5.8
50dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.8 
>ref|XM_478222.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2901

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 322  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 381
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 2846 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 2787

                                                     
Query: 382  tcctcgatgctctcgtcgttgccataagcctgagcagcagt 422
            ||||| || ||||| || |  ||||||||||| ||||||||
Sbjct: 2786 tcctcaatactctcatcttcaccataagcctgtgcagcagt 2746
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>ref|XM_506351.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1197_D06.108
            patrial mRNA
          Length = 3655

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 322  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 381
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3312 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3253

                                                     
Query: 382  tcctcgatgctctcgtcgttgccataagcctgagcagcagt 422
            ||||| || ||||| || |  ||||||||||| ||||||||
Sbjct: 3252 tcctcaatactctcatcttcaccataagcctgtgcagcagt 3212
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>gb|AY224569.1| Oryza sativa (japonica cultivar-group) isolate 29950 unknown mRNA
          Length = 1032

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 322 agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 381
           |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 977 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 918

                                                    
Query: 382 tcctcgatgctctcgtcgttgccataagcctgagcagcagt 422
           ||||| || ||||| || |  ||||||||||| ||||||||
Sbjct: 917 tcctcaatactctcatcttcaccataagcctgtgcagcagt 877
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>dbj|AB078881.1| Oryza sativa CRTintP mRNA for calreticulin interacted protein,
            complete cds
          Length = 3401

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 322  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 381
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3141 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3082

                                                     
Query: 382  tcctcgatgctctcgtcgttgccataagcctgagcagcagt 422
            ||||| || ||||| || |  ||||||||||| ||||||||
Sbjct: 3081 tcctcaatactctcatcttcaccataagcctgtgcagcagt 3041
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>dbj|AK065220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G13, full
            insert sequence
          Length = 3655

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 322  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 381
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3312 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3253

                                                     
Query: 382  tcctcgatgctctcgtcgttgccataagcctgagcagcagt 422
            ||||| || ||||| || |  ||||||||||| ||||||||
Sbjct: 3252 tcctcaatactctcatcttcaccataagcctgtgcagcagt 3212
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 352      tctgggtcattggcaagctcttcaagcatgtcctcgatgctctcgtcgttgccataagcc 411
                ||||||||| || |||||||||||||||||||||| || ||||| || |  |||||||||
Sbjct: 18664296 tctgggtcactgacaagctcttcaagcatgtcctcaatactctcatcttcaccataagcc 18664355

                           
Query: 412      tgagcagcagt 422
                || ||||||||
Sbjct: 18664356 tgtgcagcagt 18664366



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 192      attttcaccacattttcaac 211
                ||||||||||||||||||||
Sbjct: 24795024 attttcaccacattttcaac 24795005



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 192     attttcaccacattttcaac 211
               ||||||||||||||||||||
Sbjct: 1259552 attttcaccacattttcaac 1259571
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>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1197_D06
          Length = 103844

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                         
Query: 352   tctgggtcattggcaagctcttcaagcatgtcctcgatgctctcgtcgttgccataagcc 411
             ||||||||| || |||||||||||||||||||||| || ||||| || |  |||||||||
Sbjct: 89350 tctgggtcactgacaagctcttcaagcatgtcctcaatactctcatcttcaccataagcc 89409

                        
Query: 412   tgagcagcagt 422
             || ||||||||
Sbjct: 89410 tgtgcagcagt 89420
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>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence
          Length = 135880

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 111   aaatttggtagtaacaacagacaac 135
             |||||||||||||||||||||||||
Sbjct: 47564 aaatttggtagtaacaacagacaac 47540
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>gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete sequence
          Length = 122859

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 111   aaatttggtagtaacaacagacaac 135
             |||||||||||||||||||||||||
Sbjct: 38895 aaatttggtagtaacaacagacaac 38871
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>gb|DQ139901.1| Trimorphodon biscutatus CRISP-TRI1 mRNA, partial cds
          Length = 708

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 186 gtatatattttcaccacatttt 207
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139900.1| Telescopus dhara CRISP-TEL1 mRNA, partial cds
          Length = 630

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 186 gtatatattttcaccacatttt 207
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139890.1| Dispholidus typus CRISP-DIS2 mRNA, complete cds
          Length = 714

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 186 gtatatattttcaccacatttt 207
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139889.1| Dispholidus typus CRISP-DIS1 mRNA, complete cds
          Length = 714

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 186 gtatatattttcaccacatttt 207
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|AY261467.1| Trimeresurus jerdonii cysteine-rich venom protein mRNA, complete
           cds
          Length = 723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 290 tatatattttcaccacatttt 270
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>gb|AY423708.1| Trimeresurus stejnegeri cysteine-rich secretory protein mRNA,
           partial cds
          Length = 1250

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 270 tatatattttcaccacatttt 250
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>gb|AF384219.1| Trimeresurus flavoviridis triflin mRNA, complete cds
          Length = 1321

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 337 tatatattttcaccacatttt 317
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>gb|AF384218.1| Agkistrodon blomhoffi ablomin mRNA, complete cds
          Length = 1336

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 355 tatatattttcaccacatttt 335
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>gb|AY181983.1| Crotalus atrox catrin mRNA, complete cds
          Length = 1367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 400 tatatattttcaccacatttt 380
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>gb|AY181982.1| Agkistrodon piscivorus piscivorus piscivorin mRNA, complete cds
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 353 tatatattttcaccacatttt 333
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>emb|AL935288.9| Zebrafish DNA sequence from clone CH211-250C4, complete sequence
          Length = 181644

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   tatattttcaccacattttca 209
             |||||||||||||||||||||
Sbjct: 15508 tatattttcaccacattttca 15528
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>gb|U59447.1|PMU59447 Trimeresurus mucrosquamatus prepro-cysteine-rich venom protein
           mRNA, complete cds
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 tatatattttcaccacatttt 207
           |||||||||||||||||||||
Sbjct: 347 tatatattttcaccacatttt 327
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>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete
             sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   agaaacaattacatccaaaagtca 177
             |||||||| |||||||||||||||
Sbjct: 56276 agaaacaaatacatccaaaagtca 56299
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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 186  gtatatattttcaccacattttca 209
            ||||||||| ||||||||||||||
Sbjct: 4835 gtatatattatcaccacattttca 4812
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 192      attttcaccacattttcaac 211
                ||||||||||||||||||||
Sbjct: 13950365 attttcaccacattttcaac 13950346
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>ref|XM_386428.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06252.1)
           partial mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 agcctgagcagcagtctcaa 427
           ||||||||||||||||||||
Sbjct: 686 agcctgagcagcagtctcaa 705
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   attttcaccacattttcaac 211
             ||||||||||||||||||||
Sbjct: 61117 attttcaccacattttcaac 61136
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>gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosome 1, complete sequence
          Length = 191967

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ctcatcagcaagctctgggt 358
              ||||||||||||||||||||
Sbjct: 103117 ctcatcagcaagctctgggt 103136
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>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence
          Length = 113258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 125   caacagacaactacatccaaaagtcagggagaaaca 160
             ||||||||||||||||| ||||  || |||||||||
Sbjct: 46708 caacagacaactacatcaaaaacccaaggagaaaca 46673
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>gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, complete sequence
          Length = 207781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 186   gtatatattttcaccacattttca 209
             ||||||||| ||||||||||||||
Sbjct: 99956 gtatatattatcaccacattttca 99979
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>emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chromosome 1 Contains part
             of the KCNH1 gene for a potassium voltage-gated channel,
             subfamily H (eag-related), member, complete sequence
          Length = 150090

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   ggtatatattttcaccacattttc 208
             ||||||||| ||||||||||||||
Sbjct: 38036 ggtatatatattcaccacattttc 38013
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>emb|AL162738.12| Human DNA sequence from clone RP5-1110L4 on chromosome 1p35.3-36.13
              Contains the 5' end of a novel gene, complete sequence
          Length = 121828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ttaggtatatattttcacca 201
              ||||||||||||||||||||
Sbjct: 111716 ttaggtatatattttcacca 111735
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>emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chromosome 1p22.3-31.1
             Contains a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 119481

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   catcagcaagctctgggtca 360
             ||||||||||||||||||||
Sbjct: 44350 catcagcaagctctgggtca 44369
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>emb|AL121915.8|HSJ1193N1 Human DNA sequence from clone RP5-1193N1 on chromosome 20 Contains the
             LAMR1P1 gene for laminin receptor 1 pseudogene 1, complete
             sequence
          Length = 51859

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    ccccaaagctagctagctat 94
             ||||||||||||||||||||
Sbjct: 24470 ccccaaagctagctagctat 24451
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>gb|AY299475.1| Ophiophagus hannah opharin precursor, mRNA, complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 406 gtatatattttcaccacatt 387
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>emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 211018

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ttcaagcatgtcctcgatgc 391
             ||||||||||||||||||||
Sbjct: 25304 ttcaagcatgtcctcgatgc 25323
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 192      attttcaccacattttcaac 211
                ||||||||||||||||||||
Sbjct: 13945340 attttcaccacattttcaac 13945321
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>gb|AY181984.1| Ophiophagus hannah ophanin mRNA, complete cds
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 397 gtatatattttcaccacatt 378
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>gb|DQ139898.1| Philodryas olfersii CRISP-PHI2 mRNA, partial cds
          Length = 708

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139897.1| Philodryas olfersii CRISP-PHI1 mRNA, partial cds
          Length = 696

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139895.1| Liophis poecilogyrus CRISP-LIO1 mRNA, partial cds
          Length = 699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139894.1| Leioheterodon madagascariensis CRISP-LEI1 mRNA, partial cds
          Length = 642

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139891.1| Dispholidus typus CRISP-DIS3 mRNA, complete cds
          Length = 714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gtatatattttcaccacatt 205
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 125    caacagacaactacatccaaaagtcagggagaaaca 160
              ||||||||||||||||| ||||  || |||||||||
Sbjct: 134942 caacagacaactacatcaaaaacccaaggagaaaca 134907
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     cccgcttgaccgaccccgcc 255
               ||||||||||||||||||||
Sbjct: 5415096 cccgcttgaccgaccccgcc 5415077
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   attttcaccacattttcaac 211
             ||||||||||||||||||||
Sbjct: 24387 attttcaccacattttcaac 24406
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    attttcaccacattttcaac 211
              ||||||||||||||||||||
Sbjct: 161159 attttcaccacattttcaac 161178
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0493C06
          Length = 158923

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   attttcaccacattttcaac 211
             ||||||||||||||||||||
Sbjct: 29475 attttcaccacattttcaac 29456
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>dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1007_H09
          Length = 42137

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   attttcaccacattttcaac 211
             ||||||||||||||||||||
Sbjct: 29129 attttcaccacattttcaac 29148
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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gctagctagctatgtgcatg 101
              ||||||||||||||||||||
Sbjct: 110959 gctagctagctatgtgcatg 110940
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>dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1433G4, complete
             sequence
          Length = 175784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aaacaattacatccaaaagt 175
             ||||||||||||||||||||
Sbjct: 73717 aaacaattacatccaaaagt 73736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,552,842
Number of Sequences: 3902068
Number of extensions: 3552842
Number of successful extensions: 69709
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69437
Number of HSP's gapped (non-prelim): 272
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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