ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC103796.3| Homo sapiens chromosome 11, clone RP11-1033A18, c... 44 0.36
2emb|BX072537.8| Zebrafish DNA sequence from clone DKEY-15F17, co... 44 0.36
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
4dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
5gb|AC006614.1| Caenorhabditis elegans cosmid C34H3, complete seq... 42 1.4
6gb|AC131059.6| Mus musculus chromosome 1, clone RP24-108K12, com... 42 1.4
7ref|XM_580700.2| PREDICTED: Bos taurus similar to Cullin-7 (CUL-... 42 1.4
8gb|AC136455.3| Mus musculus BAC clone RP24-481H2 from chromosome... 42 1.4
9gb|AC119846.14| Mus musculus chromosome 1, clone RP23-45A13, com... 42 1.4
10gb|AF131216.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTB-... 42 1.4
11emb|CR318633.23| Zebrafish DNA sequence from clone CH211-117B1 i... 42 1.4
12emb|AL731718.30| Mouse DNA sequence from clone RP23-167O21 on ch... 42 1.4
13gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosom... 42 1.4
14emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on ch... 42 1.4
15emb|BX248503.7| Zebrafish DNA sequence from clone CH211-232M7 in... 42 1.4
16gb|AC069259.14| Homo sapiens 3 BAC RP11-163H6 (Roswell Park Canc... 42 1.4
17emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 42 1.4
18emb|AL807737.12| Mouse DNA sequence from clone RP23-386N10 on ch... 42 1.4
19emb|AL139281.7| Human DNA sequence from clone RP11-215C7 on chro... 42 1.4
20gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 42 1.4
21gb|AC087541.23| Mus musculus strain C57BL/6J chromosome 16 clone... 42 1.4
22gb|AC127596.3| Mus musculus BAC clone RP23-56B4 from chromosome ... 40 5.6
23emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 ... 40 5.6
24emb|Z80213.2|CEC09E9 Caenorhabditis elegans Cosmid C09E9, comple... 40 5.6
25gb|AC018541.7| Homo sapiens chromosome 8, clone RP11-108E14, com... 40 5.6
26emb|CR936913.7| Human DNA sequence from clone DAAP-27A1 on chrom... 40 5.6
27gb|AC008060.5| Homo sapiens PAC clone RP5-912I13 from 7, complet... 40 5.6
28gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's... 40 5.6
29emb|BX088556.11| Human DNA sequence from clone DASS-67H14 on chr... 40 5.6
30emb|AL935042.6| Human DNA sequence from clone DAQB-96B10 on chro... 40 5.6
31emb|AL645941.11| Human DNA sequence from clone XXbac-181M17 on c... 40 5.6
32emb|AL662845.5| Human DNA sequence from clone XXbac-136A3 on chr... 40 5.6
33emb|AL353581.14| Human DNA sequence from clone RP11-65L19 on chr... 40 5.6
34gb|AC161605.7| Mus musculus BAC clone RP23-230N15 from chromosom... 40 5.6
35emb|BX511204.3|RN187K23 Rattus norvegicus chromosome 1 BAC RP32-... 40 5.6
36emb|CR759798.3| Human DNA sequence from clone DAMC-226H3 on chro... 40 5.6
37emb|CR752645.3| Human DNA sequence from clone DADB-223G19 on chr... 40 5.6
38gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, compl... 40 5.6
39gb|AC104816.4| Homo sapiens BAC clone RP11-690I4 from 4, complet... 40 5.6
40gb|AC021955.11| Homo sapiens chromosome 8, clone RP11-238G17, co... 40 5.6
41gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, com... 40 5.6
42gb|AC091934.2| Homo sapiens chromosome 5 clone RP11-31J6, comple... 40 5.6
43gb|AC162805.2| Mus musculus BAC clone RP23-109O16 from chromosom... 40 5.6
44gb|AC148708.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.6
45gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.6
46gb|AC148668.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.6
47emb|BX927138.5| Human DNA sequence from clone DAMA-91I23 on chro... 40 5.6
48gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, co... 40 5.6
49dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.6
50emb|BX294131.7| Zebrafish DNA sequence from clone CH211-254O18, ... 40 5.6
51emb|AL805965.19| Mouse DNA sequence from clone RP23-193K10 on ch... 40 5.6
52emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene 40 5.6
53emb|AL954846.32| Zebrafish DNA sequence from clone CH211-279C3 i... 40 5.6
54emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in... 40 5.6
55emb|BX629359.1|CNS09SBT Tetraodon nigroviridis BAC sequence 40 5.6
56dbj|AP000868.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.6
57gb|AC131733.3| Mus musculus BAC clone RP23-98C9 from 8, complete... 40 5.6
58emb|X87344.1|HSEVMHC H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP... 40 5.6
59emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on ch... 40 5.6
60dbj|AP002381.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.6 
>gb|AC103796.3| Homo sapiens chromosome 11, clone RP11-1033A18, complete sequence
          Length = 211799

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 139    tgatctgtaaaatgaaaatgtt 160
              ||||||||||||||||||||||
Sbjct: 176464 tgatctgtaaaatgaaaatgtt 176443
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>emb|BX072537.8| Zebrafish DNA sequence from clone DKEY-15F17, complete sequence
          Length = 226685

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 95     agaagcacctgcagaagcagaa 116
              ||||||||||||||||||||||
Sbjct: 115024 agaagcacctgcagaagcagaa 115045



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ttgcatcatcacttcatcag 254
             ||||||||||||||||||||
Sbjct: 99967 ttgcatcatcacttcatcag 99986
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 100    cacctgcagaagcagaaccagc 121
              ||||||||||||||||||||||
Sbjct: 576603 cacctgcagaagcagaaccagc 576582
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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 100   cacctgcagaagcagaaccagc 121
             ||||||||||||||||||||||
Sbjct: 54656 cacctgcagaagcagaaccagc 54635
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>gb|AC006614.1| Caenorhabditis elegans cosmid C34H3, complete sequence
          Length = 33803

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 369  ctaattttttcgtaaatttct 389
            |||||||||||||||||||||
Sbjct: 5203 ctaattttttcgtaaatttct 5223
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>gb|AC131059.6| Mus musculus chromosome 1, clone RP24-108K12, complete sequence
          Length = 189961

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    aagaagcacctgcagaagcag 114
             |||||||||||||||||||||
Sbjct: 73132 aagaagcacctgcagaagcag 73112
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>ref|XM_580700.2| PREDICTED: Bos taurus similar to Cullin-7 (CUL-7) (LOC504558), mRNA
          Length = 5797

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 112  cagaaccagcctgcctgcctacctg 136
            ||||||| |||||||||||||||||
Sbjct: 4047 cagaacctgcctgcctgcctacctg 4071
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>gb|AC136455.3| Mus musculus BAC clone RP24-481H2 from chromosome 6, complete sequence
          Length = 166458

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     cattggaaaaagattgagtag 53
              |||||||||||||||||||||
Sbjct: 108635 cattggaaaaagattgagtag 108655
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>gb|AC119846.14| Mus musculus chromosome 1, clone RP23-45A13, complete sequence
          Length = 242338

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     aagaagcacctgcagaagcag 114
              |||||||||||||||||||||
Sbjct: 230332 aagaagcacctgcagaagcag 230352
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>gb|AF131216.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTB-164D9, CTB-169o5,
              CTB-65D4, CTC-271o23, CTC-367J24, complete sequence; and
              clones CTC-493P15, CTB-91N18, partial sequence
          Length = 321261

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    ccagcctgcctgcctacctgc 137
              |||||||||||||||||||||
Sbjct: 232014 ccagcctgcctgcctacctgc 232034
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>emb|CR318633.23| Zebrafish DNA sequence from clone CH211-117B1 in linkage group 10,
              complete sequence
          Length = 158788

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 52     agcaaatctcatcttgctctc 72
              |||||||||||||||||||||
Sbjct: 102107 agcaaatctcatcttgctctc 102087
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>emb|AL731718.30| Mouse DNA sequence from clone RP23-167O21 on chromosome 4, complete
            sequence
          Length = 133646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 120  gcctgcctgcctacctgcatg 140
            |||||||||||||||||||||
Sbjct: 4549 gcctgcctgcctacctgcatg 4529
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>gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosome 16, complete sequence
          Length = 178619

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    ccagcctgcctgcctacctgc 137
              |||||||||||||||||||||
Sbjct: 142542 ccagcctgcctgcctacctgc 142562
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>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the
             3' end of the PROK1 gene for Prokineticin 1, a putatative
             novel transcript, an unprocessed pseudogene, a novel
             transcript and the LOC395116 gene for the shaker subfamily
             potassium channel KCNA10, complete sequence
          Length = 101529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   atctgtaaaatgaaaatgttg 161
             |||||||||||||||||||||
Sbjct: 88841 atctgtaaaatgaaaatgttg 88861
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>emb|BX248503.7| Zebrafish DNA sequence from clone CH211-232M7 in linkage group 10,
             complete sequence
          Length = 127345

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    agcaaatctcatcttgctctc 72
             |||||||||||||||||||||
Sbjct: 72096 agcaaatctcatcttgctctc 72076
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>gb|AC069259.14| Homo sapiens 3 BAC RP11-163H6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166530

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     ttttctttgtctgtacaaaaa 95
              |||||||||||||||||||||
Sbjct: 135232 ttttctttgtctgtacaaaaa 135252
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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
             complete sequence
          Length = 178148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    ctctcatttttctttgtctgt 88
             |||||||||||||||||||||
Sbjct: 43065 ctctcatttttctttgtctgt 43085
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>emb|AL807737.12| Mouse DNA sequence from clone RP23-386N10 on chromosome 4, complete
             sequence
          Length = 84442

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   gcctgcctgcctacctgcatg 140
             |||||||||||||||||||||
Sbjct: 75807 gcctgcctgcctacctgcatg 75827
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>emb|AL139281.7| Human DNA sequence from clone RP11-215C7 on chromosome 10 Contains the
              gene for pilin-like transcription factor (PILB) (CGI-131),
              a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
              activation protein zeta polypeptide (YWHAZ)  pseudogene,
              the gene for a novel protein similar to bHLH protein
              Ptf1-p48 (PTF1A) (possible ortholog of rodent pancreas
              specific transcription factor 1a (Ptf1a)), a novel gene, a
              novel pseudogene and five CpG islands, complete sequence
          Length = 176783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 365    tgctctaattttttcgtaaatttcttcat 393
              ||||||||||||||| ||| |||||||||
Sbjct: 150178 tgctctaattttttcttaattttcttcat 150150
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 371     aattttttcgtaaatttcttcatgg 395
               |||||||| ||||||||||||||||
Sbjct: 1316164 aatttttttgtaaatttcttcatgg 1316188
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>gb|AC087541.23| Mus musculus strain C57BL/6J chromosome 16 clone rp23-230d17,
            complete sequence
          Length = 204316

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 117  ccagcctgcctgcctacctgc 137
            |||||||||||||||||||||
Sbjct: 6443 ccagcctgcctgcctacctgc 6463
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>gb|AC127596.3| Mus musculus BAC clone RP23-56B4 from chromosome 10, complete sequence
          Length = 114020

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cagcctgcctgcctacctgc 137
             ||||||||||||||||||||
Sbjct: 31129 cagcctgcctgcctacctgc 31110
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>emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 in linkage group 21,
             complete sequence
          Length = 176058

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tgtacaaaaagaagcacctg 105
             ||||||||||||||||||||
Sbjct: 40033 tgtacaaaaagaagcacctg 40052
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>emb|Z80213.2|CEC09E9 Caenorhabditis elegans Cosmid C09E9, complete sequence
          Length = 12224

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 365  tgctctaattttttcgtaaa 384
            ||||||||||||||||||||
Sbjct: 6815 tgctctaattttttcgtaaa 6834
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>gb|AC018541.7| Homo sapiens chromosome 8, clone RP11-108E14, complete sequence
          Length = 156674

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aaaatgttgccaaactcttg 172
              ||||||||||||||||||||
Sbjct: 136624 aaaatgttgccaaactcttg 136605
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>emb|CR936913.7| Human DNA sequence from clone DAAP-27A1 on chromosome 6, complete
             sequence
          Length = 99908

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 61953 catgatctgtaaaatgaaaa 61972
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>gb|AC008060.5| Homo sapiens PAC clone RP5-912I13 from 7, complete sequence
          Length = 161566

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    caaaaagaagcacctgcaga 109
             ||||||||||||||||||||
Sbjct: 65171 caaaaagaagcacctgcaga 65190
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>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 143705

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tctcatcttgctctcatttt 77
             ||||||||||||||||||||
Sbjct: 96407 tctcatcttgctctcatttt 96388
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>emb|BX088556.11| Human DNA sequence from clone DASS-67H14 on chromosome 6, complete
             sequence
          Length = 114576

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 88519 catgatctgtaaaatgaaaa 88538
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>emb|AL935042.6| Human DNA sequence from clone DAQB-96B10 on chromosome 6 Contains the
             HLA-Z pseudogene for major histocompatibility complex,
             class I, Z, the HLA-DMB gene for major histocompatibility
             complex, class II, DM beta, the HLA-DMA gene for major
             histocompatibility complex, class II, DM alpha, the 5' end
             of the BRD2 gene for bromodomain containing 2 and 3 CpG
             islands, complete sequence
          Length = 95788

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 46472 catgatctgtaaaatgaaaa 46491
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>emb|AL645941.11| Human DNA sequence from clone XXbac-181M17 on chromosome 6 contains
            the HLA-DMB gene for major histocompatibility complex,
            class II, DM beta, the HLA-DMA gene for major
            histocompatibility complex, class II, DM alpha, the BRD2
            gene for bromodomain containing 2 and two CpG islands,
            complete sequence
          Length = 71501

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  catgatctgtaaaatgaaaa 156
            ||||||||||||||||||||
Sbjct: 5192 catgatctgtaaaatgaaaa 5211
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>emb|AL662845.5| Human DNA sequence from clone XXbac-136A3 on chromosome 6 contains
            the HLA-DMB gene for major histocompatibility complex,
            class II, DM beta, the HLA-DMA gene for major
            histocompatibility complex, class II, DM alpha, the BRD2
            gene for bromodomain containing 2, the HLA-DOA gene for
            major histocompatibility complex, class II, DO alpha and
            two CpG islands, complete sequence
          Length = 97128

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  catgatctgtaaaatgaaaa 156
            ||||||||||||||||||||
Sbjct: 5192 catgatctgtaaaatgaaaa 5211
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>emb|AL353581.14| Human DNA sequence from clone RP11-65L19 on chromosome 13 Contains a
             heat shock 90kDa protein 1, beta (HSPCB) pseudogene, a
             novel gene and a tubby like protein 3 (TULP3) pseudogene,
             complete sequence
          Length = 148942

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   atctgtaaaatgaaaatgttgcca 164
             |||||||||||||| |||||||||
Sbjct: 23056 atctgtaaaatgaatatgttgcca 23079
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>gb|AC161605.7| Mus musculus BAC clone RP23-230N15 from chromosome 17, complete sequence
          Length = 216631

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ttgctctcatttttctttgt 84
              ||||||||||||||||||||
Sbjct: 214577 ttgctctcatttttctttgt 214596
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>emb|BX511204.3|RN187K23 Rattus norvegicus chromosome 1 BAC RP32-187K23, complete sequence
          Length = 157991

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    gatctgtaaaatgaaaatgt 159
              ||||||||||||||||||||
Sbjct: 155097 gatctgtaaaatgaaaatgt 155078
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>emb|CR759798.3| Human DNA sequence from clone DAMC-226H3 on chromosome 6, complete
             sequence
          Length = 118408

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 66436 catgatctgtaaaatgaaaa 66455
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>emb|CR752645.3| Human DNA sequence from clone DADB-223G19 on chromosome 6, complete
             sequence
          Length = 95556

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 65883 catgatctgtaaaatgaaaa 65902
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>gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, complete sequence
          Length = 223735

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    atctgtaaaatgaaaatgtt 160
              ||||||||||||||||||||
Sbjct: 166634 atctgtaaaatgaaaatgtt 166653
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>gb|AC104816.4| Homo sapiens BAC clone RP11-690I4 from 4, complete sequence
          Length = 169243

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    atcttgctctcatttttctt 81
             ||||||||||||||||||||
Sbjct: 84319 atcttgctctcatttttctt 84300
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>gb|AC021955.11| Homo sapiens chromosome 8, clone RP11-238G17, complete sequence
          Length = 192139

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aaaatgttgccaaactcttg 172
              ||||||||||||||||||||
Sbjct: 112876 aaaatgttgccaaactcttg 112895
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>gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, complete sequence
          Length = 204508

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    tgatctgtaaaatgaaaatg 158
              ||||||||||||||||||||
Sbjct: 107815 tgatctgtaaaatgaaaatg 107796
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>gb|AC091934.2| Homo sapiens chromosome 5 clone RP11-31J6, complete sequence
          Length = 132832

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   atctgtaaaatgaaaatgtt 160
             ||||||||||||||||||||
Sbjct: 21124 atctgtaaaatgaaaatgtt 21143
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>gb|AC162805.2| Mus musculus BAC clone RP23-109O16 from chromosome 17, complete
             sequence
          Length = 183193

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ttgctctcatttttctttgt 84
             ||||||||||||||||||||
Sbjct: 81033 ttgctctcatttttctttgt 81052
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>gb|AC148708.1| Macaca mulatta Major Histocompatibility Complex BAC MMU387P10, complete
              sequence
          Length = 176807

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    catgatctgtaaaatgaaaa 156
              ||||||||||||||||||||
Sbjct: 116905 catgatctgtaaaatgaaaa 116924
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>gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex BAC MMU065H09, complete
              sequence
          Length = 177726

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    catgatctgtaaaatgaaaa 156
              ||||||||||||||||||||
Sbjct: 102008 catgatctgtaaaatgaaaa 102027
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>gb|AC148668.1| Macaca mulatta Major Histocompatibility Complex BAC MMU038L02, complete
             sequence
          Length = 168263

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 13424 catgatctgtaaaatgaaaa 13443
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>emb|BX927138.5| Human DNA sequence from clone DAMA-91I23 on chromosome 6, complete
             sequence
          Length = 110856

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 94978 catgatctgtaaaatgaaaa 94997
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>gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, complete sequence
          Length = 206357

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    atctgtaaaatgaaaatgtt 160
              ||||||||||||||||||||
Sbjct: 145791 atctgtaaaatgaaaatgtt 145772
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    taattttttcgtaaatttcttcat 393
              ||||||||| ||||||||||||||
Sbjct: 831581 taattttttggtaaatttcttcat 831604
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>emb|BX294131.7| Zebrafish DNA sequence from clone CH211-254O18, complete sequence
          Length = 164141

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tgtacaaaaagaagcacctg 105
              ||||||||||||||||||||
Sbjct: 126590 tgtacaaaaagaagcacctg 126609
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>emb|AL805965.19| Mouse DNA sequence from clone RP23-193K10 on chromosome 2, complete
             sequence
          Length = 205790

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    aaaaagaagcacctgcagaa 110
             ||||||||||||||||||||
Sbjct: 89436 aaaaagaagcacctgcagaa 89455
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>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene
          Length = 200033

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  atctgtaaaatgaaaatgtt 160
            ||||||||||||||||||||
Sbjct: 4883 atctgtaaaatgaaaatgtt 4902
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>emb|AL954846.32| Zebrafish DNA sequence from clone CH211-279C3 in linkage group 7,
              complete sequence
          Length = 167377

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     tgtacaaaaagaagcacctg 105
              ||||||||||||||||||||
Sbjct: 131056 tgtacaaaaagaagcacctg 131037
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>emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in linkage group 21,
              complete sequence
          Length = 192865

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tgtacaaaaagaagcacctg 105
              ||||||||||||||||||||
Sbjct: 180994 tgtacaaaaagaagcacctg 181013
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>emb|BX629359.1|CNS09SBT Tetraodon nigroviridis BAC sequence
          Length = 139693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    agcctgcctgcctacctgca 138
              ||||||||||||||||||||
Sbjct: 109614 agcctgcctgcctacctgca 109633
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>dbj|AP000868.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688B18, complete
              sequence
          Length = 181589

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    atctgtaaaatgaaaatgtt 160
              ||||||||||||||||||||
Sbjct: 110536 atctgtaaaatgaaaatgtt 110555
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>gb|AC131733.3| Mus musculus BAC clone RP23-98C9 from 8, complete sequence
          Length = 203486

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    cagcctgcctgcctacctgc 137
              ||||||||||||||||||||
Sbjct: 140880 cagcctgcctgcctacctgc 140899
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>emb|X87344.1|HSEVMHC H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP1, LMP7, TAP2, DOB, DQB2 and
             RING8, 9, 13 and 14 genes
          Length = 198285

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   catgatctgtaaaatgaaaa 156
             ||||||||||||||||||||
Sbjct: 26742 catgatctgtaaaatgaaaa 26723
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>emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on chromosome 2, complete
              sequence
          Length = 134955

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    cagcctgcctgcctacctgc 137
              ||||||||||||||||||||
Sbjct: 121349 cagcctgcctgcctacctgc 121330
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>dbj|AP002381.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-475M20, complete
              sequence
          Length = 203868

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    tctgtaaaatgaaaatgttg 161
              ||||||||||||||||||||
Sbjct: 164722 tctgtaaaatgaaaatgttg 164703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,639,343
Number of Sequences: 3902068
Number of extensions: 4639343
Number of successful extensions: 139276
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139020
Number of HSP's gapped (non-prelim): 256
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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