>ref|XM_472757.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2502

 Score =  272 bits (137), Expect = 8e-70
 Identities = 167/177 (94%)
 Strand = Plus / Minus

                                                                        
Query: 224  acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283
            |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2444 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 2385

                                                                        
Query: 284  agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343
            ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 2384 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 2325

                                                                     
Query: 344  tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtgg 400
            ||  |||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 2324 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgg 2268

>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete
             sequence
          Length = 131246

 Score =  272 bits (137), Expect = 8e-70
 Identities = 167/177 (94%)
 Strand = Plus / Plus

                                                                         
Query: 224   acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283
             |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 49536 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 49595

                                                                         
Query: 284   agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343
             ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 49596 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 49655

                                                                      
Query: 344   tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtgg 400
             ||  |||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 49656 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgg 49712

>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
              complete sequence
          Length = 176383

 Score =  272 bits (137), Expect = 8e-70
 Identities = 167/177 (94%)
 Strand = Plus / Plus

                                                                          
Query: 224    acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283
              |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 147623 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 147682

                                                                          
Query: 284    agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343
              ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 147683 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 147742

                                                                       
Query: 344    tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtgg 400
              ||  |||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 147743 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgg 147799

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  272 bits (137), Expect = 8e-70
 Identities = 167/177 (94%)
 Strand = Plus / Plus

                                                                            
Query: 224      acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283
                |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 23053206 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 23053265

                                                                            
Query: 284      agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343
                ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 23053266 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 23053325

                                                                         
Query: 344      tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtgg 400
                ||  |||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 23053326 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgg 23053382

>dbj|AK106770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F08, full
            insert sequence
          Length = 2771

 Score =  272 bits (137), Expect = 8e-70
 Identities = 167/177 (94%)
 Strand = Plus / Minus

                                                                        
Query: 224  acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283
            |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2556 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 2497

                                                                        
Query: 284  agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343
            ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 2496 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 2437

                                                                     
Query: 344  tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtgg 400
            ||  |||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 2436 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgg 2380

>gb|AY108789.1| Zea mays PCO072847 mRNA sequence
          Length = 505

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 252 cgaggaagtccctgacgatgacgaagatcctgagcgggctcgcctcgtccttgcccacgt 311
           ||||||||||||||||||  | ||||||||||| ||||   ||||| |||||| |   ||
Sbjct: 194 cgaggaagtccctgacgaccatgaagatcctgaacgggtgggcctcctccttggcggagt 135

                                 
Query: 312 cgccgtggtagtactcggtgat 333
           |||||||| |||||||||||||
Sbjct: 134 cgccgtggaagtactcggtgat 113

>emb|X95326.1|CRRNA818 C.reinhardtii mRNA for LI818r-3 protein
          Length = 1542

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 358 gcgctcgccgtcctccagctcccggatcacctcct 392
           ||||||| |||||||||||||| |||| |||||||
Sbjct: 758 gcgctcgacgtcctccagctccaggataacctcct 724

>ref|XM_470823.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1939

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 359 cgctcgccgtcctccagctccc 380
           ||||||||||||||||||||||
Sbjct: 286 cgctcgccgtcctccagctccc 307

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 359      cgctcgccgtcctccagctccc 380
                ||||||||||||||||||||||
Sbjct: 15594005 cgctcgccgtcctccagctccc 15593984

>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete
             sequence
          Length = 115079

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 359   cgctcgccgtcctccagctccc 380
             ||||||||||||||||||||||
Sbjct: 93556 cgctcgccgtcctccagctccc 93535

>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence,
            complete sequence
          Length = 178748

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 359  cgctcgccgtcctccagctccc 380
            ||||||||||||||||||||||
Sbjct: 3959 cgctcgccgtcctccagctccc 3938

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 359      cgctcgccgtcctccagctccc 380
                ||||||||||||||||||||||
Sbjct: 15588539 cgctcgccgtcctccagctccc 15588518

>dbj|AK106027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C11, full
           insert sequence
          Length = 1667

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 359 cgctcgccgtcctccagctccc 380
           ||||||||||||||||||||||
Sbjct: 286 cgctcgccgtcctccagctccc 307

>dbj|AK073726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058M13, full
           insert sequence
          Length = 1802

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 359 cgctcgccgtcctccagctccc 380
           ||||||||||||||||||||||
Sbjct: 287 cgctcgccgtcctccagctccc 308

>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence
          Length = 200529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 342    cgtggcccagcacccggcgct 362
              |||||||||||||||||||||
Sbjct: 161387 cgtggcccagcacccggcgct 161367

>gb|AF326961.1|AF326961 Bovine herpesvirus 2 ribonucleotide reductase large subunit and
            ribonucleotide reductase small subunit genes, complete
            cds
          Length = 3312

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  cctgagcgggctcgcctcgtc 300
            |||||||||||||||||||||
Sbjct: 2082 cctgagcgggctcgcctcgtc 2062

>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence
          Length = 140465

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     ccagtgagtgatcaactcatc 61
              |||||||||||||||||||||
Sbjct: 114105 ccagtgagtgatcaactcatc 114085

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 356     cggcgctcgccgtcctccagc 376
               |||||||||||||||||||||
Sbjct: 3429706 cggcgctcgccgtcctccagc 3429726



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ggcccagcacccggcgctcg 364
               ||||||||||||||||||||
Sbjct: 4649836 ggcccagcacccggcgctcg 4649855

>emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on chromosome 13, complete
              sequence
          Length = 219226

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     ccagtgagtgatcaactcatc 61
              |||||||||||||||||||||
Sbjct: 176299 ccagtgagtgatcaactcatc 176319

>gb|AC147717.1| Gallus gallus BAC clone CH261-5M18 from chromosome unknown, complete
             sequence
          Length = 189841

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   acctccttgcacacccgctcc 244
             |||||||||||||||||||||
Sbjct: 78863 acctccttgcacacccgctcc 78883

>gb|AE010457.1| Methanopyrus kandleri AV19 section 156 of 157 of the complete genome
          Length = 14586

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 377  tcccggatcacctcctcggc 396
            ||||||||||||||||||||
Sbjct: 2899 tcccggatcacctcctcggc 2918

>ref|XM_955955.1| Neurospora crassa OR74A probable PEL1 (phosphatidylglycerophosphate
           synthase) [MIPS] (NCU01141.1) partial mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 agtactcggtgatgtccctg 340
           ||||||||||||||||||||
Sbjct: 598 agtactcggtgatgtccctg 579

>ref|XM_326633.1| Neurospora crassa OR74A probable PEL1 (phosphatidylglycerophosphate
           synthase) [MIPS] (NCU01141.1) partial mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 agtactcggtgatgtccctg 340
           ||||||||||||||||||||
Sbjct: 598 agtactcggtgatgtccctg 579

>gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, complete sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   cccagcacccggcgctcgccgtcc 370
             ||||||||| ||||||||||||||
Sbjct: 23749 cccagcaccaggcgctcgccgtcc 23726

>emb|AL139326.15| Human DNA sequence from clone RP11-351K3 on chromosome 13 Contains the
             3' end of the COG3 gene for component of oligomeric golgi
             complex 3, a novel gene (FLJ32682),a translocase of inner
             mitochondrial membrane 9 homolog (yeast) (TIMM9)
             pseudogene and a CpG island, complete sequence
          Length = 175588

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aaaaccaagcatcatacgtt 180
             ||||||||||||||||||||
Sbjct: 89416 aaaaccaagcatcatacgtt 89397

>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the
             PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like
             1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel
             pseudogene, the gene for a novel SCP-like extracellular
             protein, the gene for mitochondrial carrier homolog 1
             (MTCH1) (CGI-64) and two CpG islands, complete sequence
          Length = 133154

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    atacatcccaatcttcaaca 85
             ||||||||||||||||||||
Sbjct: 22920 atacatcccaatcttcaaca 22901

>emb|AL670009.1|NC123A4 Neurospora crassa DNA linkage group V cosmid contig 123A4
          Length = 153794

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    agtactcggtgatgtccctg 340
              ||||||||||||||||||||
Sbjct: 139585 agtactcggtgatgtccctg 139566

>emb|AL353820.2|NC13E11 Neurospora crassa DNA linkage group V Cosmid contig 13E11
          Length = 70175

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  agtactcggtgatgtccctg 340
            ||||||||||||||||||||
Sbjct: 3545 agtactcggtgatgtccctg 3526

>gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159688

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tgagtgatcaactcatcaac 64
             ||||||||||||||||||||
Sbjct: 65638 tgagtgatcaactcatcaac 65619

>gb|DQ397580.1| Cenarchaeum symbiosum clone C18D02, complete sequence
          Length = 38412

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   cgcctcgtccttgcccacgt 311
             ||||||||||||||||||||
Sbjct: 26544 cgcctcgtccttgcccacgt 26525

>gb|DQ397569.1| Cenarchaeum symbiosum clone C07D08, complete sequence
          Length = 43141

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   cgcctcgtccttgcccacgt 311
             ||||||||||||||||||||
Sbjct: 25665 cgcctcgtccttgcccacgt 25684

>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence
          Length = 123585

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   cccagcacccggcgctcgccgtcc 370
             ||||||||| ||||||||||||||
Sbjct: 95511 cccagcaccaggcgctcgccgtcc 95488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,932,442
Number of Sequences: 3902068
Number of extensions: 2932442
Number of successful extensions: 54939
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54767
Number of HSP's gapped (non-prelim): 171
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)