>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 9   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 161
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619

>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I|
           restriction enzyme R protein)
          Length = 929

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 112 AFFDKKRWCKNKCEV 68
           +F DKK WCKNK +V
Sbjct: 95  SFLDKKSWCKNKFQV 109

>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I|
           restriction enzyme R protein)
          Length = 929

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 112 AFFDKKRWCKNKCEV 68
           +F DKK WCKNK +V
Sbjct: 95  SFLDKKSWCKNKFQV 109

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 9   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 131
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133

>RL1D1_PONPY (Q5RCE6) Ribosomal L1 domain-containing protein 1|
          Length = 490

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 245 NVQKIKERDEKRKIARKSVLRLKMDFQLVSSGDAMI 138
           N +K KER +KR+ ARK+   L  D     SGD  +
Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330

>RL1D1_HUMAN (O76021) Ribosomal L1 domain-containing protein 1 (Cellular|
           senescence-inhibited gene protein) (PBK1 protein)
           (CATX-11)
          Length = 490

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 245 NVQKIKERDEKRKIARKSVLRLKMDFQLVSSGDAMI 138
           N +K KER +KR+ ARK+   L  D     SGD  +
Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330

>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog|
           B)
          Length = 269

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 9   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDH 143
           +  R+   PE ++L      TPTQ    F +HR+  K+A + KG+   H
Sbjct: 145 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTH 193

>FDHE_AQUAE (O67150) Protein fdhE homolog|
          Length = 283

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 124 FHDEAFFDKKRWCKNKCEVC 65
           F D+  F+ +RW KN C VC
Sbjct: 151 FADKVKFEHERWFKNYCPVC 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,305,234
Number of Sequences: 219361
Number of extensions: 571608
Number of successful extensions: 1727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)