ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 44 0.22
2gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 0.86
3gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 0.86
4gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 0.86
5gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 0.86
6gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 0.86
7emb|AM162280.1| Grapevine leafroll-associated virus 4 partial HS... 42 0.86
8gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 3.4
9gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
10gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
11gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 3.4
12emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 3.4
13gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating... 40 3.4
14ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.4
15emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chr... 40 3.4
16emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 3.4
17ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 3.4
18gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 3.4
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
20gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 3.4
21emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 3.4
22emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, co... 40 3.4
23emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8... 40 3.4

>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
              the SNAP91 gene for synaptosomal-associated protein, 91 kD
              homolog (mouse) (KIAA0656) and a CpG island, complete
              sequence
          Length = 167018

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 231    aatcttttgtacattataaaaa 252
              ||||||||||||||||||||||
Sbjct: 106168 aatcttttgtacattataaaaa 106189



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>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   gttttttgtcaaaaaaggcct 114
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912



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>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 212   tcttctcatccctctctttaa 232
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043



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>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   tcttcctcttctcatccctct 226
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794



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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   cctcttctcatccctctcttt 230
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706



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>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  tcttcctcttctcatccctct 226
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016



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>emb|AM162280.1| Grapevine leafroll-associated virus 4 partial HSP70h gene for heat
           shock protein 70 homologue, genomic RNA, isolate Y252-IL
          Length = 604

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 164 gttgaaaatccatcttcagtc 184
           |||||||||||||||||||||
Sbjct: 574 gttgaaaatccatcttcagtc 594



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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117



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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    atcttttgtacattataaaa 251
              ||||||||||||||||||||
Sbjct: 157323 atcttttgtacattataaaa 157304



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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   atcttttgtacattataaaa 251
             ||||||||||||||||||||
Sbjct: 28118 atcttttgtacattataaaa 28099



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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcttcctcttctcatccctc 225
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565



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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete
              sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gtacattataaaaacatctt 258
              ||||||||||||||||||||
Sbjct: 118337 gtacattataaaaacatctt 118318



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>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA
            clone MGC:52826 IMAGE:4884583), complete cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  ttttgtacattataaaaaca 254
            ||||||||||||||||||||
Sbjct: 3216 ttttgtacattataaaaaca 3235



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>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0)
           partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 231 aatcttttgtacattataaaaaca 254
           |||||||||||||||| |||||||
Sbjct: 324 aatcttttgtacattagaaaaaca 347



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>emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chromosome 9 Contain a
             novel gene, complete sequence
          Length = 69582

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   agttgaaaatccatcttcag 182
             ||||||||||||||||||||
Sbjct: 64286 agttgaaaatccatcttcag 64267



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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  atggaagggagttgggagag 138
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343



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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117



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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 232      atcttttgtacattataaaa 251
                ||||||||||||||||||||
Sbjct: 17897369 atcttttgtacattataaaa 17897350



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>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcttcctcttctcatccctc 225
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950



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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
            sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  aatcttttgtacattataaa 250
            ||||||||||||||||||||
Sbjct: 6181 aatcttttgtacattataaa 6162



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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gtacattataaaaacatctt 258
             ||||||||||||||||||||
Sbjct: 72225 gtacattataaaaacatctt 72206



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>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 236    tttgtacattataaaaacatcttt 259
              ||||||||||||||||||| ||||
Sbjct: 106494 tttgtacattataaaaacaacttt 106517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,241,514
Number of Sequences: 3902068
Number of extensions: 3241514
Number of successful extensions: 64793
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64746
Number of HSP's gapped (non-prelim): 47
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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