ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC... 33 0.22
2LIGE_PSEPA (P27457) Beta-etherase (Beta-aryl ether cleaving enzyme) 28 4.2
3COAT_NODAV (P12871) Protein alpha [Contains: Coat protein beta (... 28 5.4
4ANR21_HUMAN (Q86YR6) Ankyrin repeat domain-containing protein 21... 28 5.4
5POT15_HUMAN (Q6S5H4) Prostate, ovary, testis expressed protein o... 28 7.1
6AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) ... 28 7.1
7POT14_HUMAN (Q6S5H5) Prostate, ovary, testis expressed protein o... 27 9.3
8POT22_HUMAN (Q6S545) Prostate, ovary, testis expressed protein o... 27 9.3
9CUT20_SCHPO (O42839) 20S cyclosome/APC complex protein cut20 (Ce... 27 9.3
10GLGB_MYCPA (Q73X75) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 27 9.3

>UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 3) (Ubiquitin carrier protein
           3)
          Length = 150

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 283 PPLG--GLVQPHQLQHWDQWQMGPVDAPWD 366
           PP+G  G  Q + + HW+    GP D PWD
Sbjct: 20  PPVGISGAPQDNNIMHWNALIFGPEDTPWD 49



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>LIGE_PSEPA (P27457) Beta-etherase (Beta-aryl ether cleaving enzyme)|
          Length = 280

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 199 PLITDN*ETLFRSWAVSNSYDQAAAVDKPPL-GGLVQPHQLQHWDQWQMGPVDAPW 363
           P+I D+ E +  SW ++   D+    D+P L  G  Q + ++  D W       PW
Sbjct: 59  PVIVDDGEWVLDSWVIAEYLDEKYP-DRPMLFEGPTQKNLMKFLDNWLWSTAVGPW 113



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>COAT_NODAV (P12871) Protein alpha [Contains: Coat protein beta (EC 3.4.23.44)|
           (Nodavirus endopeptidase); Coat protein gamma]
          Length = 399

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 206 LQIIKKHCLEVGLSPIHMTKLLLLISPRLGAWCSHTNSNIGTN 334
           L + KKHCL   ++     + +LL++P  G  C    +N+G +
Sbjct: 83  LVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGAS 125



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>ANR21_HUMAN (Q86YR6) Ankyrin repeat domain-containing protein 21 (Protein POTE)|
           (Prostate, ovary, testis expressed protein)
          Length = 584

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
 Frame = +2

Query: 236 VGLSPIHMTKLLLLISPRLGAWCSH--------TNSNIGTNGRWD 346
           VG S  H    + ++  ++G WC H        + SN+G  G +D
Sbjct: 80  VGTSGDHENSFMKMLRSKMGKWCCHCFPCCRGSSKSNVGAWGDYD 124



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>POT15_HUMAN (Q6S5H4) Prostate, ovary, testis expressed protein on chromosome 15|
          Length = 581

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
 Frame = +2

Query: 236 VGLSPIHMTKLLLLISPRLGAWCSHT--------NSNIGTNGRWD 346
           VG S  H    +  +  ++G WC H          SN+GT G +D
Sbjct: 80  VGTSGDHDNSFMKTLRSKMGKWCCHCFPCCRGSGKSNVGTWGDYD 124



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>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)|
           (UDA)
          Length = 372

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -1

Query: 359 GASTGPICHWSQCWSWCGCTRPPSGGLSTAAAWSYE 252
           G  T P       W WCG + P  G       WS E
Sbjct: 31  GGGTCPALWCCSIWGWCGDSEPYCGRTCENKCWSGE 66



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>POT14_HUMAN (Q6S5H5) Prostate, ovary, testis expressed protein on chromosome 14|
          Length = 594

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
 Frame = +2

Query: 236 VGLSPIHMTKLLLLISPRLGAWCSHT--------NSNIGTNGRWD 346
           VG S  H    +  +  ++G WC H          SN+GT+G  D
Sbjct: 43  VGTSGDHDDSAMKTLRSKMGKWCRHCFPWCRGSGKSNVGTSGDHD 87



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>POT22_HUMAN (Q6S545) Prostate, ovary, testis expressed protein on chromosome 22|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
 Frame = +2

Query: 236 VGLSPIHMTKLLLLISPRLGAWCSHT--------NSNIGTNGRWD 346
           VG S  H    +  +  ++G WC H          SN+GT+G  D
Sbjct: 80  VGTSGDHDDSAMKTLRSKMGKWCCHCFPCCRGSGKSNVGTSGDHD 124



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
 Frame = +2

Query: 236 VGLSPIHMTKLLLLISPRLGAWCSHT--------NSNIGTNGRWD 346
           VG S  H    +  +  ++G WC H          SN+GT+G  D
Sbjct: 43  VGTSGDHDDSAMKTLRSKMGKWCCHCFPWCRGSGKSNVGTSGDHD 87



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>CUT20_SCHPO (O42839) 20S cyclosome/APC complex protein cut20 (Cell untimely|
           torn protein 20)
          Length = 719

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 345 SHLPLVPMLELVWLHQAPK 289
           SHLP +P+   +WLH+  K
Sbjct: 668 SHLPFIPLNSCLWLHEFEK 686



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>GLGB_MYCPA (Q73X75) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 731

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 371 STSHGASTGPICHWSQCWSWCGCTRPPS-GGLSTAAAWS 258
           +T+H ++ G +    +  SW G TRP + GGL  +  W+
Sbjct: 450 ATAHKSAPGIVTIAEESTSWPGVTRPTNLGGLGFSMKWN 488


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,463,815
Number of Sequences: 219361
Number of extensions: 974829
Number of successful extensions: 2236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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