ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,... 280 3e-72
2gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)... 252 7e-64
3gb|AY104965.1| Zea mays PCO078085 mRNA sequence 240 3e-60
4gb|BT017406.1| Zea mays clone EL01N0330B04.c mRNA sequence 151 2e-33
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
6dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
7dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
8dbj|AK121282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
9dbj|AK099498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, comple... 42 1.3
11dbj|AK153805.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.3
12emb|BX890577.6| Zebrafish DNA sequence from clone CH211-95G8, co... 42 1.3
13gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, comple... 42 1.3
14emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chr... 42 1.3
15gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, comp... 40 4.9
16gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, co... 40 4.9
17ref|XM_846152.1| PREDICTED: Canis familiaris similar to Integrin... 40 4.9
18emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, compl... 40 4.9
19gb|AC125452.7| Mus musculus, clone RP23-43F6, complete sequence 40 4.9
20emb|AL096699.11|HS1145L23 Human DNA sequence from clone RP5-1145... 40 4.9
21emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 40 4.9
22emb|BX322649.4| Mouse DNA sequence from clone RP23-206P23 on chr... 40 4.9
23gb|AC093020.6| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Cl... 40 4.9
24emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in ... 40 4.9
25emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in l... 40 4.9
26emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 i... 40 4.9
27emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chrom... 40 4.9
28gb|AF047671.1|AF047671 Homo sapiens dystrophin (DMD) gene, dupli... 40 4.9
29gb|U60822.1|HSU60822 Human dystrophin (DMD) gene, exons 7, 8 and... 40 4.9
30gb|AC140038.13| Mus musculus chromosome 1, clone RP24-290D14, co... 40 4.9
31emb|CT476827.2| Pan troglodytes chromosome X BAC RP43-033L16, co... 40 4.9 
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
              aminoalcoholphosphotransferase, putative growth-regulating
              factor 1, putative GAG-POL precursor, putative GAG-POL
              precursor, putative RIRE2 orf3, putative anthocyanin
              regulatory C1, putative protein T30F21.6, putative copia
              polyprotein, putative copia polyprotein, putative protein
              NP_196765.1, and gb protein genes, complete cds; and
              putative zinc finger protein gene, partial cds
          Length = 144159

 Score =  280 bits (141), Expect = 3e-72
 Identities = 250/283 (88%), Gaps = 5/283 (1%)
 Strand = Plus / Minus

                                                                          
Query: 83     gaaaagctaacaaaaac-ttgttaaaccttaaatagatcagacagagctgcactaaaaag 141
              ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| 
Sbjct: 125019 gaaaagctaacaaaaaccttgttatagcttaaatagatcagaaagagctgcactaaaaac 124960

                                                                          
Query: 142    agaggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccc 201
              | ||||| |||||||||||||||||| | ||||||||||| ||||||||||||| |||||
Sbjct: 124959 aaaggtgcttcctgttaaaaggagcctactgttgttacat-aaaggctcttgtggccccc 124901

                                                                          
Query: 202    ctaattacagataattaagaaacattgtttagaagttgggctgtctccaattcatatgac 261
              ||||||||||||||||||||||| || || | ||| ||||   |||||||||||||||||
Sbjct: 124900 ctaattacagataattaagaaaccttcttcaaaagctggg---tctccaattcatatgac 124844

                                                                          
Query: 262    caagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaactccaa 321
              |||||||  | || |||||||||||  |||| |||||||| || ||||| || || ||||
Sbjct: 124843 caagctgtggttgctgataagccccaacttgcgggcctggagctgccaccccgaccccaa 124784

                                                         
Query: 322    cattgggaccaatggcagatgggacctgttgatgcaccatggg 364
              |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 124783 cattgggaccaatggccgatggcacctgttgatgcaccatggg 124741
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>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score =  252 bits (127), Expect = 7e-64
 Identities = 277/321 (86%), Gaps = 7/321 (2%)
 Strand = Plus / Plus

                                                                         
Query: 46    cagttcatatggaatactgatatcacatgggagaatagaaaagctaacaaaaactt-gtt 104
             ||||||| |||| |||||||  |||| |||| || | |||| |||||||||||| | |||
Sbjct: 26975 cagttcagatgggatactgaattcacttggggga-tggaaaggctaacaaaaacctcgtt 27033

                                                                         
Query: 105   aaaccttaaatagatcagacagagctgcactaaaaagagaggtggttcctgttaaaagga 164
             | | ||||||||||||||| |||||||||||||||| | ||||| |||||||||||||||
Sbjct: 27034 atagcttaaatagatcagaaagagctgcactaaaaacaaaggtgcttcctgttaaaagga 27093

                                                                         
Query: 165   gccaattgttgttacattaaaggctcttgtgacccccc-taattacagataattaagaaa 223
             ||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 27094 gcctactgttgttacat-aaaggctcttgtgaccccccctaattacagataattaagaaa 27152

                                                                         
Query: 224   cattgtttagaagttgggctgtctccaattcatatgaccaagctgctgctgttgataagc 283
             | || || | ||| ||||   ||||||||||||||| ||||||||  | || ||||||||
Sbjct: 27153 ccttcttcaaaagctggg---tctccaattcatatggccaagctgtggttgctgataagc 27209

                                                                         
Query: 284   ccccgcttgggggcctggtgcagccacaccaactccaacattgggaccaatggcagatgg 343
              ||  |||| |||||||| || ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 27210 tccaacttgcgggcctggagctgccaccccaaccccaacattgggaccaatggccgatgg 27269

                                  
Query: 344   gacctgttgatgcaccatggg 364
              ||||||||||||||||||||
Sbjct: 27270 cacctgttgatgcaccatggg 27290
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>gb|AY104965.1| Zea mays PCO078085 mRNA sequence
          Length = 1376

 Score =  240 bits (121), Expect = 3e-60
 Identities = 245/283 (86%), Gaps = 5/283 (1%)
 Strand = Plus / Minus

                                                                        
Query: 83   gaaaagctaacaaaaac-ttgttaaaccttaaatagatcagacagagctgcactaaaaag 141
            ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| 
Sbjct: 1276 gaaaagctaacaaaaaccttgttatagcttaaatagatcagaaagagctgcactaaaaac 1217

                                                                        
Query: 142  agaggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccc 201
            | ||||| |||| || |||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 1216 aaaggtgcttcccgtcaaaaggagcctactgatgttacat-aaaggctcttgtgaccccc 1158

                                                                        
Query: 202  ctaattacagataattaagaaacattgtttagaagttgggctgtctccaattcatatgac 261
            ||||||||||||||||||||||| || || | ||| ||||   |||||||||||||||||
Sbjct: 1157 ctaattacagataattaagaaaccttcttcaaaagctggg---tctccaattcatatgac 1101

                                                                        
Query: 262  caagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaactccaa 321
            |||  ||  | || ||||| |||||  |||| |||||||| || ||||| || || ||||
Sbjct: 1100 caatttgtcgttgctgatatgccccaacttgtgggcctggagctgccaccccgaccccaa 1041

                                                       
Query: 322  cattgggaccaatggcagatgggacctgttgatgcaccatggg 364
            |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1040 cattgggaccaatggccgatggcacctgttgatgcaccatggg 998
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>gb|BT017406.1| Zea mays clone EL01N0330B04.c mRNA sequence
          Length = 778

 Score =  151 bits (76), Expect = 2e-33
 Identities = 130/144 (90%), Gaps = 3/144 (2%)
 Strand = Plus / Minus

                                                                       
Query: 83  gaaaagctaacaaaaac-ttgttaaaccttaaatagatcagacagagctgcactaaaaag 141
           ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| 
Sbjct: 668 gaaaagctaacaaaaaccttgttatagcttaaatagatcagaaagagctgcactaaaaac 609

                                                                       
Query: 142 agaggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtga-cccc 200
           | ||||| |||| || |||||||||| | || ||||||| ||||||||||||||| ||||
Sbjct: 608 aaaggtgcttcccgtcaaaaggagcctactgatgttaca-taaaggctcttgtgaccccc 550

                                   
Query: 201 cctaattacagataattaagaaac 224
           ||||||||||||||||||||||||
Sbjct: 549 cctaattacagataattaagaaac 526



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 321 acattgggaccaatggcagatgggacctgttgatgcaccatggg 364
           ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 431 acattgggaccaatggccgatggcacctgttgatgcaccatggg 388
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  135 bits (68), Expect = 1e-28
 Identities = 125/140 (89%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                           
Query: 85      aaagctaacaaaaacttgttaaaccttaaatagatcagacagagctgcactaaaaagaga 144
               ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 5377741 aaagctaacaaaaccctgttataccttaaatagatcagaaagagctgcactaaaaacaaa 5377682

                                                                           
Query: 145     ggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccccta 204
                ||| ||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||
Sbjct: 5377681 tgtgcttcctgttaaaagtagcctctt-ttgttaca-taaaggctcttgtga-cccccta 5377625

                                   
Query: 205     attacagataattaagaaac 224
               ||||||||||||||| ||||
Sbjct: 5377624 attacagataattaataaac 5377605



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                           
Query: 257     atgaccaagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaac 316
               ||||||||||||  | || |||||||||||  | || ||| |||||| ||||||||||||
Sbjct: 5377584 atgaccaagctggggttgctgataagcccctacctgaggggctggtgtagccacaccaac 5377525

                                                                      
Query: 317     tccaacattgggaccaatggcagatgggacctgttgatgcaccatgggatgtgga 371
               |||| | ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 5377524 tccaccgttgggaccaattgccgattggacttgttgatgcaccatgggatgtgga 5377470
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>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0015B15
          Length = 123083

 Score =  135 bits (68), Expect = 1e-28
 Identities = 125/140 (89%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                          
Query: 85     aaagctaacaaaaacttgttaaaccttaaatagatcagacagagctgcactaaaaagaga 144
              ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 119253 aaagctaacaaaaccctgttataccttaaatagatcagaaagagctgcactaaaaacaaa 119194

                                                                          
Query: 145    ggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccccta 204
               ||| ||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||
Sbjct: 119193 tgtgcttcctgttaaaagtagcctctt-ttgttaca-taaaggctcttgtga-cccccta 119137

                                  
Query: 205    attacagataattaagaaac 224
              ||||||||||||||| ||||
Sbjct: 119136 attacagataattaataaac 119117



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                          
Query: 257    atgaccaagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaac 316
              ||||||||||||  | || |||||||||||  | || ||| |||||| ||||||||||||
Sbjct: 119096 atgaccaagctggggttgctgataagcccctacctgaggggctggtgtagccacaccaac 119037

                                                                     
Query: 317    tccaacattgggaccaatggcagatgggacctgttgatgcaccatgggatgtgga 371
              |||| | ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 119036 tccaccgttgggaccaattgccgattggacttgttgatgcaccatgggatgtgga 118982
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>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0529B09
          Length = 138188

 Score =  135 bits (68), Expect = 1e-28
 Identities = 125/140 (89%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagctaacaaaaacttgttaaaccttaaatagatcagacagagctgcactaaaaagaga 144
            ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 8675 aaagctaacaaaaccctgttataccttaaatagatcagaaagagctgcactaaaaacaaa 8616

                                                                        
Query: 145  ggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccccta 204
             ||| ||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||
Sbjct: 8615 tgtgcttcctgttaaaagtagcctctt-ttgttaca-taaaggctcttgtga-cccccta 8559

                                
Query: 205  attacagataattaagaaac 224
            ||||||||||||||| ||||
Sbjct: 8558 attacagataattaataaac 8539



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 257  atgaccaagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaac 316
            ||||||||||||  | || |||||||||||  | || ||| |||||| ||||||||||||
Sbjct: 8518 atgaccaagctggggttgctgataagcccctacctgaggggctggtgtagccacaccaac 8459

                                                                   
Query: 317  tccaacattgggaccaatggcagatgggacctgttgatgcaccatgggatgtgga 371
            |||| | ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 8458 tccaccgttgggaccaattgccgattggacttgttgatgcaccatgggatgtgga 8404
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>dbj|AK121282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108L12, full
            insert sequence
          Length = 2972

 Score =  135 bits (68), Expect = 1e-28
 Identities = 125/140 (89%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagctaacaaaaacttgttaaaccttaaatagatcagacagagctgcactaaaaagaga 144
            ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 2869 aaagctaacaaaaccctgttataccttaaatagatcagaaagagctgcactaaaaacaaa 2810

                                                                        
Query: 145  ggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccccta 204
             ||| ||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||
Sbjct: 2809 tgtgcttcctgttaaaagtagcctctt-ttgttaca-taaaggctcttgtga-cccccta 2753

                                
Query: 205  attacagataattaagaaac 224
            ||||||||||||||| ||||
Sbjct: 2752 attacagataattaataaac 2733



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 257  atgaccaagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaac 316
            ||||||||||||  | || |||||||||||  | || ||| |||||| ||||||||||||
Sbjct: 2712 atgaccaagctggggttgctgataagcccctacctgaggggctggtgtagccacaccaac 2653

                                                                   
Query: 317  tccaacattgggaccaatggcagatgggacctgttgatgcaccatgggatgtgga 371
            |||| | ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 2652 tccaccgttgggaccaattgccgattggacttgttgatgcaccatgggatgtgga 2598
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>dbj|AK099498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028A11, full
            insert sequence
          Length = 2906

 Score =  135 bits (68), Expect = 1e-28
 Identities = 125/140 (89%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagctaacaaaaacttgttaaaccttaaatagatcagacagagctgcactaaaaagaga 144
            ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 2803 aaagctaacaaaaccctgttataccttaaatagatcagaaagagctgcactaaaaacaaa 2744

                                                                        
Query: 145  ggtggttcctgttaaaaggagccaattgttgttacattaaaggctcttgtgaccccccta 204
             ||| ||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||
Sbjct: 2743 tgtgcttcctgttaaaagtagcctctt-ttgttaca-taaaggctcttgtga-cccccta 2687

                                
Query: 205  attacagataattaagaaac 224
            ||||||||||||||| ||||
Sbjct: 2686 attacagataattaataaac 2667



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 257  atgaccaagctgctgctgttgataagcccccgcttgggggcctggtgcagccacaccaac 316
            ||||||||||||  | || |||||||||||  | || ||| |||||| ||||||||||||
Sbjct: 2646 atgaccaagctggggttgctgataagcccctacctgaggggctggtgtagccacaccaac 2587

                                                                   
Query: 317  tccaacattgggaccaatggcagatgggacctgttgatgcaccatgggatgtgga 371
            |||| | ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 2586 tccaccgttgggaccaattgccgattggacttgttgatgcaccatgggatgtgga 2532
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>gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, complete sequence
          Length = 154859

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tttcacatgggagcaaagaaa 43
             |||||||||||||||||||||
Sbjct: 21311 tttcacatgggagcaaagaaa 21291
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>dbj|AK153805.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630099M22 product:unclassifiable, full
           insert sequence
          Length = 2943

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 67  atcacatgggagaatagaaaa 87
           |||||||||||||||||||||
Sbjct: 668 atcacatgggagaatagaaaa 648
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>emb|BX890577.6| Zebrafish DNA sequence from clone CH211-95G8, complete sequence
          Length = 114934

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   ttacagataattaagaaacat 226
             |||||||||||||||||||||
Sbjct: 51780 ttacagataattaagaaacat 51800
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>gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, complete sequence
          Length = 223367

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    ttcacatgggagcaaagaaaa 44
             |||||||||||||||||||||
Sbjct: 54699 ttcacatgggagcaaagaaaa 54679
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>emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chromosome 3, complete
            sequence
          Length = 162394

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 67   atcacatgggagaatagaaaa 87
            |||||||||||||||||||||
Sbjct: 6980 atcacatgggagaatagaaaa 6960
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>gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, complete sequence
          Length = 253153

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     gagcaaagaaaagcagttca 52
              ||||||||||||||||||||
Sbjct: 179858 gagcaaagaaaagcagttca 179877
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>gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, complete sequence
          Length = 170117

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    gggggcctggtgcagccaca 311
              ||||||||||||||||||||
Sbjct: 132576 gggggcctggtgcagccaca 132557
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>ref|XM_846152.1| PREDICTED: Canis familiaris similar to Integrin beta-5 precursor
           (LOC608977), mRNA
          Length = 3076

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 gggggcctggtgcagccaca 311
           ||||||||||||||||||||
Sbjct: 925 gggggcctggtgcagccaca 944
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>emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, complete sequence
          Length = 165027

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agctaacaaaaacttgttaa 106
             ||||||||||||||||||||
Sbjct: 32552 agctaacaaaaacttgttaa 32533
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>gb|AC125452.7| Mus musculus, clone RP23-43F6, complete sequence
          Length = 162045

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   gggggcctggtgcagccaca 311
             ||||||||||||||||||||
Sbjct: 17412 gggggcctggtgcagccaca 17393
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>emb|AL096699.11|HS1145L23 Human DNA sequence from clone RP5-1145L23 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types) and a novel gene,
             complete sequence
          Length = 203006

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   acaccaactccaacattggg 328
             ||||||||||||||||||||
Sbjct: 99312 acaccaactccaacattggg 99293
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>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
             (pseudo)gene for a novel protein similar to high-mobility
             group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    atagaaaagctaacaaaaac 99
             ||||||||||||||||||||
Sbjct: 18882 atagaaaagctaacaaaaac 18901
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>emb|BX322649.4| Mouse DNA sequence from clone RP23-206P23 on chromosome 4, complete
             sequence
          Length = 50666

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    atagaaaagctaacaaaaac 99
             ||||||||||||||||||||
Sbjct: 26909 atagaaaagctaacaaaaac 26928
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>gb|AC093020.6| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Clone RP23-358B23,
             complete sequence
          Length = 206396

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   ccaagctgctgctgttgataagcc 284
             |||||||||||||||||| |||||
Sbjct: 11129 ccaagctgctgctgttgagaagcc 11106
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>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7, complete
              sequence
          Length = 187890

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    aaaaggagccaattgttgtt 177
              ||||||||||||||||||||
Sbjct: 125145 aaaaggagccaattgttgtt 125164
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>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10, complete
              sequence
          Length = 241472

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ttacagataattaagaaaca 225
              ||||||||||||||||||||
Sbjct: 104839 ttacagataattaagaaaca 104858
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>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
             complete sequence
          Length = 209195

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   aaaaggagccaattgttgtt 177
             ||||||||||||||||||||
Sbjct: 12580 aaaaggagccaattgttgtt 12599
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>emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chromosome X, complete
              sequence
          Length = 223392

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    agaaacattgtttagaagtt 238
              ||||||||||||||||||||
Sbjct: 221254 agaaacattgtttagaagtt 221235
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>gb|AF047671.1|AF047671 Homo sapiens dystrophin (DMD) gene, duplication junction in intron
           7
          Length = 657

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 acaccaactccaacattggg 328
           ||||||||||||||||||||
Sbjct: 435 acaccaactccaacattggg 454
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>gb|U60822.1|HSU60822 Human dystrophin (DMD) gene, exons 7, 8 and 9, and partial cds
          Length = 112359

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   acaccaactccaacattggg 328
             ||||||||||||||||||||
Sbjct: 45414 acaccaactccaacattggg 45433
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>gb|AC140038.13| Mus musculus chromosome 1, clone RP24-290D14, complete sequence
          Length = 171967

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   gagcaaagaaaagcagttca 52
            ||||||||||||||||||||
Sbjct: 7090 gagcaaagaaaagcagttca 7109
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>emb|CT476827.2| Pan troglodytes chromosome X BAC RP43-033L16, complete sequence
          Length = 165984

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    acaccaactccaacattggg 328
              ||||||||||||||||||||
Sbjct: 132513 acaccaactccaacattggg 132494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,919,599
Number of Sequences: 3902068
Number of extensions: 3919599
Number of successful extensions: 80386
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80288
Number of HSP's gapped (non-prelim): 75
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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