ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 29 3.2
2BUD4_YEAST (P47136) Bud site selection protein BUD4 27 9.2

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 220 WNGRDKPKQDDQLFRDRGHSTAVHLNLWLHDPHAGVE 330
           W+ RD  + DD++ R+ GH    H     H P AG E
Sbjct: 84  WSHRDHGETDDEVSREYGHQPQGHR---YHSPEAGDE 117



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>BUD4_YEAST (P47136) Bud site selection protein BUD4|
          Length = 1447

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 373 ARSRLRNKQ*RTSSVLHQREDHEATGLDELPWNGLDPGRVGHLV 242
           +RSR+ N + R SS+ +   D+E   L    WN LDP R   L+
Sbjct: 683 SRSRIYNPKSRVSSLNYY--DNEDYILSNSEWNALDPMRRNTLI 724


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,991,186
Number of Sequences: 219361
Number of extensions: 841693
Number of successful extensions: 1623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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